PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8689s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 292aa    MW: 33465.5 Da    PI: 8.6866
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8689s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.21.5e-1818109196
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffk+l p+d ++  +  +p +f+++++  +e s +++l+ ++g sW +k+  +++++  ++ +kGW +F ++ngL  ++f++F+++g+++
  Araha.8689s0001.1.p  18 FFKILRPADLSSDIMRGIPLNFIKSISD-EEFSHKMVLKVSWGSSWPIKI--CRNPSFyFMEKKGWDQFLSDNGLGNNEFLTFTHQGNMC 104
                          99************9********99964.57899****************..999999556669***********************999 PP

                          E..EEEE CS
                   B3  90 felvvkv 96 
                          f   v +
  Araha.8689s0001.1.p 105 F--SVDI 109
                          9..6655 PP
2B335.22.1e-112132891596
                          -EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                   B3  15 rlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                           l +pk f e h+  ++e ++ ++ d++g rsW+v ++ +++++r  + +GW + +k+ gL  gD+++F+l++   +e+ vkv
  Araha.8689s0001.1.p 213 FLGVPKMFEELHM--PTEATMFKIHDPEGkRSWDVMYKLTGTQSR--FCAGWIRLAKEIGLVIGDVCTFTLIK--PTEMIVKV 289
                          4668999987776..4567799****99889******88777777..668********************987..56667776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-1911112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-1912112IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-1716110No hitNo description
PfamPF023629.1E-1718109IPR003340B3 DNA binding domain
PROSITE profilePS5086312.50618113IPR003340B3 DNA binding domain
SMARTSM010192.0E-2218113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.69E-17199289IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.476199291IPR003340B3 DNA binding domain
CDDcd100175.73E-13200291No hitNo description
Gene3DG3DSA:2.40.330.101.6E-15200289IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-11202290IPR003340B3 DNA binding domain
PfamPF023622.1E-8211289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MKNRAFGQIM DDAENPGFFK ILRPADLSSD IMRGIPLNFI KSISDEEFSH KMVLKVSWGS  60
SWPIKICRNP SFYFMEKKGW DQFLSDNGLG NNEFLTFTHQ GNMCFSVDIY QIDGKELLTP  120
RRSATIASSS GRNKREQRKD IYKDVKKEEE IESWSESSYP GLKAAESTGR RQKHVTKKKK  180
MMEVESICND SEDDNVSLVP EFTITIKKSY LFFLGVPKMF EELHMPTEAT MFKIHDPEGK  240
RSWDVMYKLT GTQSRFCAGW IRLAKEIGLV IGDVCTFTLI KPTEMIVKVS K*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00517DAPTransfer from AT5G18090Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8689s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0878530.0AY087853.1 Arabidopsis thaliana clone 38961 mRNA, complete sequence.
GenBankBT0040990.0BT004099.1 Arabidopsis thaliana clone RAFL15-45-L21 (R20966) unknown protein (At5g18090) mRNA, complete cds.
GenBankBT0055530.0BT005553.1 Arabidopsis thaliana clone U20966 unknown protein (At5g18090) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020877797.10.0B3 domain-containing protein At5g18090
SwissprotQ9FK610.0Y5809_ARATH; B3 domain-containing protein At5g18090
TrEMBLD7LXR40.0D7LXR4_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.6__1808__AT5G18090.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56521135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18090.11e-178B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]