PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.8674s0012.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 433aa MW: 48036.6 Da PI: 4.6203

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.8674s0012.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.8	2.4e-24	337	387	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k+++l+d+ + F+lpi++AAke++vc+TvLK+iCR+ ++RWPhRkiksl Araha.8674s0012.1.p 337 TKKMTLKDICQLFDLPIEQAAKEMKVCVTVLKKICRKGSLSRWPHRKIKSL 387 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.756	327	407	IPR003035	RWP-RK domain
Pfam	PF02042	8.8E-21	339	387	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MAGDDSKPSA PKDNGYEDPY NDPFDGFGGF TDEDLINVMS DSNPNLMDMP FTEHASPTVF 60 PTLPFDVDET QLLHGLDLSV TNHDIKDEFD SLSFVDDCFT ISLDMYDHPN DDLNDNNDVP 120 GEIGNDNGKS IVGEGTRLEV STRVFGGANG PDFEIGGSST MPVPVTPTIS DGVYLCDCCK 180 MLRELVHLKE EVEQNTLNIF GGIGFFCHAV LLTELLVPDS MERQSQTIHL QELTMEEVKK 240 FIEDYCSQRV ASGLSLARDT NAAFFQAMSA NFIANQSTPM LTIPSPTDVP MSLVSPEEAR 300 PVPPVPPHVG LREQSTTKLP KQREKRKTPL AAQRERTKKM TLKDICQLFD LPIEQAAKEM 360 KVCVTVLKKI CRKGSLSRWP HRKIKSLQAK IEALKTLLLT AKDDVVKARA EAEIERLQRQ 420 IDKICSDILK NM*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MAGDDSKPSA PKDNGYEDPY NDPFDGFGGF TDEDLINVMS DSNPNLMDMP FTEHASPTVF  60
PTLPFDVDET QLLHGLDLSV TNHDIKDEFD SLSFVDDCFT ISLDMYDHPN DDLNDNNDVP  120
GEIGNDNGKS IVGEGTRLEV STRVFGGANG PDFEIGGSST MPVPVTPTIS DGVYLCDCCK  180
MLRELVHLKE EVEQNTLNIF GGIGFFCHAV LLTELLVPDS MERQSQTIHL QELTMEEVKK  240
FIEDYCSQRV ASGLSLARDT NAAFFQAMSA NFIANQSTPM LTIPSPTDVP MSLVSPEEAR  300
PVPPVPPHVG LREQSTTKLP KQREKRKTPL AAQRERTKKM TLKDICQLFD LPIEQAAKEM  360
KVCVTVLKKI CRKGSLSRWP HRKIKSLQAK IEALKTLLLT AKDDVVKARA EAEIERLQRQ  420
IDKICSDILK NM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.8674s0012.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002873757.2	0.0	uncharacterized protein LOC9309825
TrEMBL	A0A178UGY4	0.0	A0A178UGY4_ARATH; Uncharacterized protein
STRING	fgenesh1_pm.C_scaffold_6001277	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4076	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	3e-14	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Araha.8674s0012.1.p