PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8600s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 854aa    MW: 96485.1 Da    PI: 6.7481
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8600s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.72.3e-09734758327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          +++C f+++tG Ck+G  CkF+H++
  Araha.8600s0005.1.p 734 QPECLFYMKTGDCKFGHVCKFHHPR 758
                          789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF015823.0E-1656185IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522001.83E-1357181IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002550.002859181IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010410.21883193IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101401.8E-586159IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525401.14E-38203460IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.4E-17230464IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3009.7E-7232369IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003644.0E-23234249No hitNo description
PRINTSPR003644.0E-23310324No hitNo description
PRINTSPR003644.0E-23401415No hitNo description
SuperFamilySSF467854.08E-6437540IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:3.80.10.103.3E-10534647IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520471.18E-10561642No hitNo description
PRINTSPR003644.0E-23615631No hitNo description
PROSITE profilePS5010313.159731759IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025731758IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-6734758IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5735760IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
STRSSASSAP PPSKRSTGTK SKILLAEVET PPQLKFPEHS ITGFEPVLLI SCNDNQDSEE  60
TYFINYIFNE LCLRGFAPLR YDITRSIVNG CPEMLYRSRV CIIIFSMNYA SSSECLDGFV  120
ATMDYLKANN LLLIPVFFKV SLEDVSGQSC YFEKAFSRLE NSVQASQVLK WRAAMIKLTS  180
INRYHYMKWH QVMLAKNIFK DVCFLLSSET NGIKHPFEII LSLVNCSQSS APHIVGLWGM  240
AGIGKTTIAR DIFRTQAGKY DVCYFLPDFH IMCQTKGLSH LRDEFFSKIF GEEKVFTDIC  300
DTKPSFTRDR LLDKRVLIVL DGVSNARDAE FLLGGFGWFS GGHTIIFTSR NRQVLVQCNV  360
KELYQIPKLS EFESLCLCCY FSTEENWKKS MSSISDLVNY ASGIPLALGV LGSSVLSQCV  420
NDEEEHLRRL RQHPPIEIQD AFRRSFNELD DNEKTIILDL ACFFRGEDKD HVVNILDGCG  480
FLTDLGIYGL IDESLISLVD NRIDMPNIFQ DTGRFVVCQE NNEAGKRSRL WDPNDIVDVL  540
TNNSGKEEIE GIFLDASDLA FELSPTVFER MYRLRLLKLH CPTSNHCKNL HDFSPNLKEL  600
YLAGTAIREL PSSIEELTRL VTLDLENCKR LQDLPPGISN LKASVTLSTK RPASSMDTRD  660
LSSLEDMASP YKRCRLQRVI ESVILRLRKR KVANRVSRAS SFSEIQLGSA PTLVNDRSHK  720
SFWGYHVLPE RPSQPECLFY MKTGDCKFGH VCKFHHPRDK ETHVPENTSS MASKTPDLNP  780
LVLSLSLGSS ATSEKFRIHN NTSSMVSEKP HSNPLRFLSL LGTSSCVSDT QATVGRETND  840
SKQGEEHSEI YEW*
Functional Description ? help Back to Top
Source Description
UniProtDisease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269|PubMed:15165183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8600s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010439702.10.0PREDICTED: probable WRKY transcription factor 19
SwissprotF4JT781e-176RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBLA0A1J3HY470.0A0A1J3HY47_NOCCA; Putative WRKY transcription factor 19
STRINGXP_010439703.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.22e-75WRKY family protein
Publications ? help Back to Top
  1. Meyers BC,Morgante M,Michelmore RW
    TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes.
    Plant J., 2002. 32(1): p. 77-92
    [PMID:12366802]
  2. Sinapidou E, et al.
    Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis.
    Plant J., 2004. 38(6): p. 898-909
    [PMID:15165183]
  3. Kempema LA,Cui X,Holzer FM,Walling LL
    Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids.
    Plant Physiol., 2007. 143(2): p. 849-65
    [PMID:17189325]