PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.8594s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 350aa MW: 39610.9 Da PI: 6.8567

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.8594s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	52.8	5.1e-17	9	53	3	47
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 i n++ r+++f kR+ng+lKK +ELS+LC+++++ +i+s+ + + Araha.8594s0001.1.p 9 IANERSRKTSFMKRKNGVLKKLNELSTLCGVQACALIYSPYQSVP 53 89*************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00404	3.4E-8	1	21	IPR002100	Transcription factor, MADS-box
SMART	SM00432	5.0E-20	1	58	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	15.278	1	47	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.97E-21	2	93	IPR002100	Transcription factor, MADS-box
CDD	cd00266	8.96E-30	2	83	No hit	No description
Pfam	PF00319	6.6E-16	9	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-8	21	36	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.4E-8	36	57	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MKKVKLSLIA NERSRKTSFM KRKNGVLKKL NELSTLCGVQ ACALIYSPYQ SVPESWPSTK 60 GAKEVASKFM EMPSTTRAKK MMSQETYLME RITKAKEQLK NLVVENRESQ VRRFMFDCLE 120 GKMSDYRYDA KDLQDLLCCM NKYLGQLNGR IEILKETGES SSVSPFPTTI GVVDILDAAS 180 PSVLAADMTP SFVADASLVT APSGFSDHIQ YQEMNMNQNH HEPIQHHVPT NFCDCFQNQN 240 INNVQYQTPY NLFDQIQQGS YNMNINQDYS NYNLNLNLNL NSNQQQSFMN PMVEQQMGYA 300 GGRASIPFMD GNHYNYHQLP VVDLASTSYM PSITTTTTGV YDPYINNNL*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MKKVKLSLIA NERSRKTSFM KRKNGVLKKL NELSTLCGVQ ACALIYSPYQ SVPESWPSTK  60
GAKEVASKFM EMPSTTRAKK MMSQETYLME RITKAKEQLK NLVVENRESQ VRRFMFDCLE  120
GKMSDYRYDA KDLQDLLCCM NKYLGQLNGR IEILKETGES SSVSPFPTTI GVVDILDAAS  180
PSVLAADMTP SFVADASLVT APSGFSDHIQ YQEMNMNQNH HEPIQHHVPT NFCDCFQNQN  240
INNVQYQTPY NLFDQIQQGS YNMNINQDYS NYNLNLNLNL NSNQQQSFMN PMVEQQMGYA  300
GGRASIPFMD GNHYNYHQLP VVDLASTSYM PSITTTTTGV YDPYINNNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.8594s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB830662	0.0	AB830662.1 Arabidopsis halleri subsp. halleri AGL36 gene for agamous-like MADS-box protein AGL36, partial cds, isolate: e030.
GenBank	AB830663	0.0	AB830663.1 Arabidopsis halleri subsp. tatrica AGL36 gene for agamous-like MADS-box protein AGL36, partial cds, isolate: e031.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020879058.1	0.0	agamous-like MADS-box protein AGL36
Swissprot	Q7XJK6	1e-170	AGL36_ARATH; Agamous-like MADS-box protein AGL36
TrEMBL	S6B3X1	0.0	S6B3X1_ARAHA; Agamous-like MADS-box protein AGL36 (Fragment)
TrEMBL	S6C661	0.0	S6C661_ARAHH; Agamous-like MADS-box protein AGL36 (Fragment)
STRING	AT5G26650.1	1e-168	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM70	28	415

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26650.1	1e-167	AGAMOUS-like 36

Link Out ? help Back to Top
Phytozome	Araha.8594s0001.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]