PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8490s0017.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 302aa    MW: 33252.3 Da    PI: 6.3134
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8490s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.71e-27164224259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          dD ++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp ++ +tY+g+H+++
  Araha.8490s0017.1.p 164 DDNHTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 224
                          8****************************999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-27155224IPR003657WRKY domain
SuperFamilySSF1182902.22E-25160225IPR003657WRKY domain
SMARTSM007742.9E-36163225IPR003657WRKY domain
PfamPF031062.4E-25164224IPR003657WRKY domain
PROSITE profilePS5081120.128164226IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEEVMTMIFR GMKLVKTLES SLPEKPPESL STSLDEIAKT FSDANERLKM LLEIRNSETA  60
LNQLKPVVAS VANQMLMQME PSLMQEYWLR CGGSTSSHEG TEAMFQTQLM AVDGGGGRNL  120
TAAAEGSGAS GSSTPRQRRR KDEGEEQTVL VAALRTGNTD LPPDDNHTWR KYGQKEILGS  180
RFPRAYYRCT HQKLYNCPAK KQVQRLNDDP FTFRVTYRGS HTCHIYSTAP TASSAAPTAP  240
IPSVTTGHSV DYGLAVVDMA DAMFSSGGVG SNMDFIFSIN DPSQHHQRFR QLDDGDESKL  300
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-21164223968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8490s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935840.0AB493584.1 Arabidopsis thaliana At2g40740 mRNA for hypothetical protein, partial cds, clone: RAAt2g40740.
GenBankDQ0565750.0DQ056575.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879888.10.0WRKY transcription factor 55
SwissprotQ9SHB50.0WRK55_ARATH; WRKY transcription factor 55
TrEMBLD7LFT80.0D7LFT8_ARALL; WRKY DNA-binding protein 55
STRINGfgenesh1_pm.C_scaffold_40018170.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-157WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]