PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8266s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family WRKY
Protein Properties Length: 367aa    MW: 40808 Da    PI: 6.4211
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8266s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.44.6e-21297337241
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v  +
  Araha.8266s0004.1.p 297 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVPAA 337
                          7****************************9*******9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-22281336IPR003657WRKY domain
SuperFamilySSF1182901.83E-18289337IPR003657WRKY domain
PROSITE profilePS5081120.277291334IPR003657WRKY domain
SMARTSM007743.4E-17296351IPR003657WRKY domain
PfamPF031067.5E-18298337IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MFRFPVSLGG SRDEARHDQI TPLDEHRVVV DEVDFFSEKR DRVSRENIND EDDEANKAHV  60
KMENSRVEEN DRSRDVIIGL NLLTANTGSD ESTVDDGLSM DMEDKRAKIE NAQLQEELKK  120
MKIENQRLRD MLNQATTNFN ALQMQLVTVM RQQEQRNSSQ DHLLATEGKA EGRKRLELQT  180
MVPRQFMDLG PSSGTAEHGA EVSSEERTTV RSGSPPSLLE SSNPRENGKR LLGREESSEE  240
SESNAWGNPN KVPKHNPSSS NSNGNRNGNV IDQSAAEATM RKARVSVRAR SEAAMISDGC  300
QWRKYGQKMA KGNPCPRAYY RCTMAGGCPV RKQVPAAITS IMNGSSHQNN NTNSNNVATS  360
NGDTRQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00447DAPTransfer from AT4G22070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8266s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0526480.0AY052648.1 Arabidopsis thaliana WRKY transcription factor 31 (WRKY31) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867796.10.0probable WRKY transcription factor 31
SwissprotQ93WT00.0WRK31_ARATH; Probable WRKY transcription factor 31
TrEMBLD7ME850.0D7ME85_ARALL; WRKY DNA-binding protein 31
STRINGfgenesh1_pm.C_scaffold_70016380.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22070.10.0WRKY DNA-binding protein 31