PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.8175s0024.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 467aa    MW: 52105.7 Da    PI: 9.5279
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.8175s0024.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.5e-057395123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Araha.8175s0024.1.p 73 FFCEICNKGFQREQNLQLHKRGH 95
                         67******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.74E-77295No hitNo description
Gene3DG3DSA:3.30.160.601.8E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0097395IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8037395IPR007087Zinc finger, C2H2
PfamPF121715.2E-67395IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355120115145IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.74E-7145170No hitNo description
SMARTSM00355240150170IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MNQDMMIPHN HDRLSFSSFV HDQEHITPNP NPNSQPAAST NTSKKKRNLP GNPDPNAEVI  60
ALSPKSLMAT NRFFCEICNK GFQREQNLQL HKRGHNMPWK LKQKTNKNQV KKKVYICPEK  120
SCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCNKCSKKYA VISDWKAHNK ICGSREFRCD  180
CGILFSRKDS FISHRSFCDV LAEESAKFFS VPSPLAANST ISTIADTNNP ILIQSQLDQS  240
SIGNVNNNHT SLKFTNSNPI QQQANAFALS SAPSPLSTPD SVHNLWKLQE EECSHQWLLN  300
EYMNNNKNII QKGIFKNQED EIKKGKIYSG SNPTDANIAS LFSYNQEAGN MASLSATTLL  360
QKVAQMGSSS SSDTSTMFGL MTTSSSIFNN TFPKSSRFKA KNKEEELTRD FLGVGSRDDQ  420
QHIHHHHLPS SVPLTVNRNV PKLAATIVGE EATVGMASDS ENTRFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-30146211368Zinc finger protein JACKDAW
5b3h_F2e-30146211368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.8175s0024.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0264280.0BT026428.1 Arabidopsis thaliana At5g60470 mRNA, complete cds.
GenBankDQ0567310.0DQ056731.1 Arabidopsis thaliana zinc finger (C2H2 type) family protein (At5g60470) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871537.10.0protein indeterminate-domain 13
SwissprotF4JYZ80.0IDD13_ARATH; Protein indeterminate-domain 13
TrEMBLD7MTU80.0D7MTU8_ARALL; Predicted protein
STRINGAl_scaffold_0008_25450.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60470.10.0C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]