PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7993s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 426aa    MW: 47793.8 Da    PI: 6.8836
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7993s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171e-056989526
                         --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                         +C+ff +   C+yG++C+ +Hg
  Araha.7993s0001.1.p 69 ICKFFTQ-QRCRYGSSCRSSHG 89
                         6**9999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.3246491IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-46490IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-46990IPR000571Zinc finger, CCCH-type
SMARTSM004435.8E-15225271IPR000467G-patch domain
PfamPF015852.8E-14227270IPR000467G-patch domain
PROSITE profilePS5017413.587227273IPR000467G-patch domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
ADIVLNGLNH DAGVKDLDEL EPERKDLDGS KCRFQHTDGR WYNGRIIGFE GSDSAKISFL  60
TPTSESMMIC KFFTQQRCRY GSSCRSSHGL DVPISSLKNY EQTKWKQSMV GSKIWAVSGS  120
KYDIWRKAEL ESWDDELQVG GVVFRDDRSS AKLGSDALAL SEFAQMTDDG EEEDEEDEEL  180
SASDTEDSVS SDYDEESPQG IGFLESTNLP RGVQTDTALF AKWENHTRGI ASKMMASMGY  240
REGMGLGVSG QGILNPILVK VLPAKRSLDY ALEHIRNGEC KSEKQKKKRS RGGKRKRGKK  300
FAEAAKAAKQ EEESKPDLFS LINEQIFPTH HVKVNSIESV KKRENKGPVD RKDLVAYQDE  360
VKDLKLEMMK LEQMVNRNKK DQVVSEAATR RLKEVRKALA NTLASQEAAS NAVVSKEKEK  420
KWLKF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1284299QKKKRSRGGKRKRGKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7993s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2291890.0AK229189.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-48-E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880634.10.0zinc finger CCCH domain-containing protein 22
SwissprotQ9SK490.0C3H22_ARATH; Zinc finger CCCH domain-containing protein 22
TrEMBLD7LJF90.0D7LJF9_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.4__403__AT2G24830.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94371016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24830.10.0C3H family protein