PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7962s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family RAV
Protein Properties Length: 354aa    MW: 40504.7 Da    PI: 8.6343
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7962s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-114693154
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++ykGV +   +g W A+I+       +kr++lg+f +a eAa+a++ a  kl+
  Araha.7962s0007.1.p 46 TKYKGVVQQQ-NGHWGAQIYAE-----HKRIWLGTFKSAHEAAAAYDSASIKLR 93
                         69****9888.8*********5.....5*********************99997 PP
2B390.71.1e-28179275185
                          EEEE-..-HHHHTT-EE--HHH.HTT..........---.......--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkke.....esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                          f+k+ltpsdv+k++rlv+pkk+a ++          +   e     e+++++++d+  r+W+++++y+++s+++v+t+GW++Fvk+++Lk
  Araha.7962s0007.1.p 179 FQKELTPSDVGKLNRLVIPKKYAVKYmpfisddqskK---EtsegvEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLK 265
                          99*****************************996550...345555899***************************************** PP

                          TT-EEEEEE- CS
                   B3  76 egDfvvFkld 85 
                          e+D++vF+  
  Araha.7962s0007.1.p 266 EKDIIVFYTC 275
                          *******944 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.31E-2446106No hitNo description
SMARTSM003803.0E-1747110IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-1447106IPR016177DNA-binding domain
PROSITE profilePS5103217.43847104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1647104IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.7E-32174274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.54E-27177275IPR015300DNA-binding pseudobarrel domain
CDDcd100178.89E-26178273No hitNo description
PROSITE profilePS5086312.323179289IPR003340B3 DNA binding domain
PfamPF023625.3E-26179276IPR003340B3 DNA binding domain
SMARTSM010196.7E-22179290IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDKMSYEAKT TTETSGSSDS VLHLTKRVKP TLVTTTTTKP ALSNTTKYKG VVQQQNGHWG  60
AQIYAEHKRI WLGTFKSAHE AAAAYDSASI KLRSFDANSH RNFPWSDFTV HEPDFQECYP  120
TEAVLNMIRD GSYQHKFRDF LRIRSQIVAN INIVGSKQVR GGEGGAQESN KCFSCTQLFQ  180
KELTPSDVGK LNRLVIPKKY AVKYMPFISD DQSKKETSEG VEDVEVVFYD RAMRQWKFRY  240
CYWRSSQSFV FTRGWNGFVK EKNLKEKDII VFYTCDVPSD VKTLEGQSKN FLMIDVHYFS  300
GNGFEVPEEV NKTVHKSSDE EMKTETLFSS KLEEETKSEE KKGGFMLFGV RIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2517827213100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7962s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0798280.0AC079828.4 Arabidopsis thaliana chromosome 1 BAC F23H24 genomic sequence, complete sequence.
GenBankAY5608830.0AY560883.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At1g51120) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891618.20.0AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6880.0RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLD7KHN00.0D7KHN0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4181__AT1G51120.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.10.0RAV family protein