PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.7885s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 288aa MW: 32032.8 Da PI: 8.1041

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.7885s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	147	194	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L+ l+P + +k Ka +L + ++Y++ Lq Araha.7885s0003.1.p 147 SHSLAERVRREKISERMRTLQNLVPGC----DKVTGKALMLDEIINYVQTLQ 194 8***********************9....555**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.37E-10	141	198	No hit	No description
SuperFamily	SSF47459	9.68E-17	141	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.453	143	193	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-16	143	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-6	147	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-9	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MATFSYFQNY PHSLLDPLLF PTPHSSINIT GFIDQNHLHP LPNISTVEDI SFNPFLDEYN 60 VDRTENSGLE KQANTTKTAT TRSSSCDHGS SAITTTGKNR GRKARNVSKS KEGVEGRKSK 120 KQKRGSKEEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMRTLQNLV PGCDKVTGKA 180 LMLDEIINYV QTLQTQVEFL SMKLTSISPV VYDFGSDLDG LILRSEMGSP EVGTSFTNTL 240 PTTTSIFPSL LDNSIVPTHA QVQEEGEGRE KFVDRSGFNN NNFCSFP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.7885s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF428350	0.0	AF428350.1 Arabidopsis thaliana unknown protein mRNA, complete cds.
GenBank	AY057549	0.0	AY057549.1 Arabidopsis thaliana probable DNA-binding protein mRNA, complete cds.
GenBank	AY087602	0.0	AY087602.1 Arabidopsis thaliana clone 36971 mRNA, complete sequence.
GenBank	AY113059	0.0	AY113059.1 Arabidopsis thaliana At5g50917/At5g50917 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871997.1	0.0	transcription factor bHLH137 isoform X1
Swissprot	Q93W88	0.0	BH137_ARATH; Transcription factor bHLH137
TrEMBL	D7MQU8	0.0	D7MQU8_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh2_kg.8__970__AT5G50915.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	1e-172	bHLH family protein

Link Out ? help Back to Top
Phytozome	Araha.7885s0003.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]