PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7846s0004.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 275aa    MW: 31496.1 Da    PI: 10.526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7846s0004.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.85.4e-2019113199
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkvl + d +++++  lp +f+++++++ e s +++++ ++g sWev++  +k+++  ++ ++GW +Fv++n L +++f++F+++g+++
  Araha.7846s0004.2.p  19 FFKVLQRVDFSSENMRALPYDFVRSFSNN-ELSGKMKIKARWGSSWEVEI--CKNPRFyFMEKSGWVKFVRDNALGDNEFLTFTHKGKMR 105
                          99***********************9877.5777****************..******555569********************999999 PP

                          E..EEEEE-S CS
                   B3  90 felvvkvfrk 99 
                          f  +v +f++
  Araha.7846s0004.2.p 106 F--TVNIFKQ 113
                          9..9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-1913115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2015119IPR015300DNA-binding pseudobarrel domain
CDDcd100171.29E-1918112No hitNo description
PROSITE profilePS5086313.74719114IPR003340B3 DNA binding domain
SMARTSM010195.4E-2319114IPR003340B3 DNA binding domain
PfamPF023627.3E-1919113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.71E-11198272IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0016198272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-9214273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.98223274IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MARNSDYDLC KEERKRESFF KVLQRVDFSS ENMRALPYDF VRSFSNNELS GKMKIKARWG  60
SSWEVEICKN PRFYFMEKSG WVKFVRDNAL GDNEFLTFTH KGKMRFTVNI FKQDGKEMLQ  120
PPQSMASMSS SRRTKTEQGI SCLATTITAE SNGGGNYKRK LNFGKKKAAE SQNSKRTEKD  180
FSVRKDSAGA SSSSVAEFTT FIKKSYLIFM RTIFKIHHPN MKKSWNVVYL VADRGASFSG  240
GWKRLAQEYP VAVGDTCKFS FIKQHELILS VLKP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7846s0004.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0203530.0BT020353.1 Arabidopsis thaliana At2g35310 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882943.10.0B3 domain-containing protein At2g35310 isoform X2
SwissprotQ5PNU41e-160Y2531_ARATH; B3 domain-containing protein At2g35310
TrEMBLD7LHU81e-180D7LHU8_ARALL; Transcriptional factor B3 family protein
STRINGfgenesh2_kg.4__1555__AT2G35310.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.11e-153B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]