PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.7761s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 284aa MW: 32224.6 Da PI: 9.7454

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.7761s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	4.9e-14	60	104	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT++E++++++a +++ + Wk+I + +g +t q++s+ qky Araha.7761s0002.1.p 60 RENWTEQEHDKFLEALHLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 104 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	54	110	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.507	55	109	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.5E-7	58	110	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.0E-18	58	107	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-11	59	107	IPR001005	SANT/Myb domain
Pfam	PF00249	8.9E-12	60	104	IPR001005	SANT/Myb domain
CDD	cd00167	8.29E-9	62	105	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MVTVNPSQAH CLPTNMNLPG YNTLAHTATT MPVSIRSNTM SFFEDPTKKI RKPYTITKSR 60 ENWTEQEHDK FLEALHLFDR DWKKIEAFVG SKTVIQIRSH AQKYFLKVQK NGTKEHLPPP 120 RPKRKANHPY PQKAPKFALT SSNALLQHDY LYSTNSHPRK HALVGCDVNL PNTVIKEEVG 180 GSENCCSSSS SSSRDKQRIQ TVTETNDQES CGKPHRVTPN FAEVYSFIGS VFDPKTTGHV 240 QRLKEMDPIN LETVLLLMRN LSVNLTSPEF EEQRKLISSY NAR*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.7761s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ937211	0.0	AJ937211.1 Arabidopsis thaliana mRNA for myb transcription factor LHY-CCA1-like3 (lcl3 gene).
GenBank	AY519508	0.0	AY519508.1 Arabidopsis thaliana MYB transcription factor (At1g01520) mRNA, complete cds.
GenBank	BT029347	0.0	BT029347.1 Arabidopsis thaliana At1g01520 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171659.1	0.0	Homeodomain-like superfamily protein
Swissprot	Q6R0H0	0.0	RVE3_ARATH; Protein REVEILLE 3
TrEMBL	A0A178W672	0.0	A0A178W672_ARATH; ASG4
STRING	AT1G01520.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1290	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01520.1	0.0	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Araha.7761s0002.1.p

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]