PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7629s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 434aa    MW: 49336.7 Da    PI: 8.7356
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7629s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.93.9e-092492861954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yp   ++  LAk++gLt++qV++WF N R +
  Araha.7629s0001.1.p 249 FEHflHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVR 286
                          6644599*****************************87 PP
2BELL113.61e-36130199372
                 BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          ++lq+kkakL+s++e V++rYkqy++q+qt++ssFe +aglgsa++Yt++Al++iS++Fr++kd+i+ qi
  Araha.7629s0001.1.p 130 AALQMKKAKLISMVETVEQRYKQYHDQMQTIVSSFEKAAGLGSANSYTHMALQTISKQFRAVKDMICLQI 199
                          689****************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-5571197IPR006563POX domain
PfamPF075267.0E-3381195IPR006563POX domain
PROSITE profilePS5007111.969227290IPR001356Homeobox domain
CDDcd000867.29E-11230290No hitNo description
SMARTSM003897.0E-8230294IPR001356Homeobox domain
SuperFamilySSF466891.75E-16231296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-26233294IPR009057Homeodomain-like
PfamPF059202.9E-17247286IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MAAFFHGESE MREPFSDLSM MNLNPFSDPT TTTDARNHHF YNLCFGSQQH RPRDEVDHIE  60
QGNSSISTFS NGGVFRVLAP NYLRAAQELL NEIVNVRNGS HGAKLERPMS KESKIYRVGD  120
IHVGHKPGVA ALQMKKAKLI SMVETVEQRY KQYHDQMQTI VSSFEKAAGL GSANSYTHMA  180
LQTISKQFRA VKDMICLQIK HINKLLRRKE CDEQLKQYLG KMAHHRSNAW RPQRGLPEKA  240
VSILRSWLFE HFLHPYPRDL DKVMLAKQTG LTKSQVSNWF INARVRVWKP LVEELYLEEM  300
NIEESLKGSN HEHSTKGLSS KQPYNNTTSD ESSNSILPTF HQRINENETP MQTSSSSCSV  360
VMRFTKQHMN QANFINFNGG FENCHTMVGN GVSLSLGLPH SCDQTFNNIQ FGSTSHGTEI  420
SGIYPYSTYQ IMD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15236294563Homeobox protein Meis2
3k2a_B2e-15236294563Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7629s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0565430.0DQ056543.1 Arabidopsis thaliana homeodomain-containing protein (At2g27220) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002880897.10.0BEL1-like homeodomain protein 5
RefseqXP_020884923.10.0BEL1-like homeodomain protein 5
SwissprotQ8S8970.0BLH5_ARATH; BEL1-like homeodomain protein 5
TrEMBLD7LGU70.0D7LGU7_ARALL; Predicted protein
STRINGAl_scaffold_0004_10720.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147491418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27220.10.0BEL1-like homeodomain 5