PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7538s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 357aa    MW: 41042.4 Da    PI: 4.2955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7538s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.83.4e-1214104194
                          EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                          ffkv       + + l +p +f +   ++k  +k +++++  g+ W++ l+  ++  +++++ +GWk+  k  +Lk g+f+ F++dg+ +
  Araha.7538s0004.1.p  14 FFKVY--LPDESGDDLEIPISFNSF--LPKSLPKNVIVRSIYGNIWKMALRKcCGETESFFMVNGWKKILKNENLKGGEFLEFEFDGSWC 99 
                          66777..4455556699****9743..56779999***************554555556**************************99888 PP

                          E..EE CS
                   B3  90 felvv 94 
                          f++++
  Araha.7538s0004.1.p 100 FNFCI 104
                          86555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.26E-189110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-1411107IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.19412108IPR003340B3 DNA binding domain
CDDcd100175.43E-1212105No hitNo description
SMARTSM010198.3E-1114108IPR003340B3 DNA binding domain
PfamPF023622.0E-1014104IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-11257355IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-6260355IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.13262353IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNRGISGDDC LPKFFKVYLP DESGDDLEIP ISFNSFLPKS LPKNVIVRSI YGNIWKMALR  60
KCCGETESFF MVNGWKKILK NENLKGGEFL EFEFDGSWCF NFCIYGRATC KKLRSSVQIG  120
DIEDESDGED DKNSDDITFL DDDGQDYDDE DKSSENIIVL TDDDDIHDVQ GYNEEDTSSE  180
DITALDDADN DDINDVQDYG EEDISSEDII VIDDDDDDQD YGDDDHADDE KERWRGVKKE  240
RKEKGSSGEH DRHYLDNHMN PFFTVNQNRQ IKYNLLRIPT KVITKHGLHF PEFINLIDPL  300
EKMFGKLKRK AEGQAIKGFR SIIRRNNVKL TDKVICELVK EMDGLVREIK VHVIRG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7538s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266321e-107AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.
GenBankCP0026881e-107CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020888769.10.0B3 domain-containing protein At5g60142 isoform X2
SwissprotQ9LST31e-175Y5142_ARATH; B3 domain-containing protein At5g60142
TrEMBLA0A178UQX51e-173A0A178UQX5_ARATH; Uncharacterized protein
STRINGBostr.26833s0220.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.11e-75B3 family protein