PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.67418s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bZIP | ||||||||
Protein Properties | Length: 253aa MW: 27959.8 Da PI: 9.87 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 48.5 | 1.9e-15 | 78 | 132 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++kr+rr+ +NRe+ArrsR+RK++++ e + v +L ae ++L+++l+ ++ +++ Araha.67418s0001.1.p 78 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVGQLRAEHSTLINRLSDMNHKYD 132 68******************************************77776666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-15 | 76 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.1E-10 | 77 | 130 | No hit | No description |
PROSITE profile | PS50217 | 10.599 | 78 | 132 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.3E-12 | 79 | 132 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.09E-10 | 80 | 130 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 83 | 98 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF12498 | 6.4E-13 | 147 | 227 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
VGTVKPEDSS ASASNQKQAQ GSIVAQTSPA ASSVRFSPTT STQKKPDVPA RQTTSISSRD 60 DSDDDDLDGD ADNGDPTDVK RARRMLSNRE SARRSRRRKQ EQMNEFDTQV GQLRAEHSTL 120 INRLSDMNHK YDAAAVDNRI LRADIETLRT KVKMAEETVK RVTGVNPLHW SRPNMGVPFN 180 NTPNASSRIP PNSNHILKPA IPSTTTSAGL ASNQRVETAN FLPEQVNREG MQNPFAHDSN 240 LYETLPHWNH KH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 99 | RRSRRRKQ |
2 | 94 | 99 | SRRRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.67418s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY057509 | 0.0 | AY057509.1 Arabidopsis thaliana bZIP transcription factor-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002877990.1 | 1e-152 | basic leucine zipper 25 | ||||
Swissprot | Q9M1G6 | 1e-148 | BZP25_ARATH; Basic leucine zipper 25 | ||||
TrEMBL | D7LUW0 | 1e-151 | D7LUW0_ARALL; Uncharacterized protein | ||||
STRING | scaffold_502576.1 | 1e-152 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5848 | 26 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54620.1 | 1e-135 | basic leucine zipper 25 |
Link Out ? help Back to Top | |
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Phytozome | Araha.67418s0001.1.p |
Publications ? help Back to Top | |||
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