PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.67312s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 443aa MW: 48796.7 Da PI: 7.431 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30 | 8.6e-10 | 248 | 285 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Araha.67312s0001.1.p 248 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 285 554459******************************88 PP | |||||||
2 | BELL | 123.5 | 8.2e-40 | 107 | 178 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL ++l+eV++rY+qy++q+q+vissFe++ag+gsak+YtslAlk+iSr+FrcLk+aia+qi Araha.67312s0001.1.p 107 ERQEIQMKKAKLSNMLHEVEQRYRQYHQQMQMVISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQI 178 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.8E-81 | 27 | 176 | IPR006563 | POX domain |
Pfam | PF07526 | 8.0E-47 | 33 | 175 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.26 | 226 | 289 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 229 | 293 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.14E-11 | 229 | 289 | No hit | No description |
SuperFamily | SSF46689 | 2.99E-17 | 230 | 296 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-29 | 232 | 296 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.6E-18 | 246 | 285 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
QPIHVGFGSG PGEDIRVGSG STGSGVTNGI ANLVSSKYLK AAQELLDEVV NADSDDMNAK 60 PQLFLSKKGS SGNDKAVGES SAGAGGEGSG GGGEAAGKRT VELGTAERQE IQMKKAKLSN 120 MLHEVEQRYR QYHQQMQMVI SSFEQAAGIG SAKSYTSLAL KTISRQFRCL KEAIAGQIKA 180 ANKSLGEEDS VSGVGRFEGS RLKFVDHHLR QQRALQQLGM IQHPSNNAWR PQRGLPERAV 240 SVLRAWLFEH FLHPYPKDSD KHMLAKQTGL TRSQVSNWFI NARVRLWKPM VEEMYMEEMK 300 EQGKNMGSME KTPLDQSNED SASKSTSNQE KSPMADTNYH MNPNHNGDLE GVTGMQGSPK 360 RLRTSDETMM QPINADFSSN EKLTMKILEE RQGIRSDGGY PFMGNFGQYQ MDEMSRFDVV 420 SDQELMAQRY SGNNNGVSLT LGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-17 | 235 | 292 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-17 | 235 | 292 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.67312s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK227272 | 0.0 | AK227272.1 Arabidopsis thaliana mRNA for putative homeodomain transcription factor, complete cds, clone: RAFL11-09-C20. | |||
GenBank | AY072175 | 0.0 | AY072175.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY096548 | 0.0 | AY096548.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | AY099854 | 0.0 | AY099854.1 Arabidopsis thaliana putative homeodomain transcription factor (At2g35940) mRNA, complete cds. | |||
GenBank | BT008422 | 0.0 | BT008422.1 Arabidopsis thaliana At2g35940 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002881420.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_020883700.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 0.0 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | D7LIM1 | 0.0 | D7LIM1_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.4__1624__AT2G35940.3 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5008 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 0.0 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | Araha.67312s0001.1.p |
Publications ? help Back to Top | |||
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