PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6616s0011.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 448aa    MW: 47516.9 Da    PI: 7.6317
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6616s0011.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-123964227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                         +++ C +++rtG C yG+rC+F+H++
  Araha.6616s0011.1.p 39 DEPDCIYYLRTGVCGYGSRCRFNHPR 64
                         6899********************96 PP
2zf-CCCH37.25e-1286110327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rtGtCk+G++Ck++H++
  Araha.6616s0011.1.p  86 HPVCQHFMRTGTCKFGASCKYHHPR 110
                          789********************96 PP
3zf-CCCH37.63.8e-12133157226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G +C+F+H+
  Araha.6616s0011.1.p 133 GEKECSYYLRTGQCKFGLTCRFNHP 157
                          7899********************9 PP
4zf-CCCH40.16.2e-13293317226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++f+rtG Ck+G++C+++H+
  Araha.6616s0011.1.p 293 DQPECQYFMRTGDCKFGSSCRYHHP 317
                          689*********************9 PP
5zf-CCCH31.62.7e-10339364227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C +f++ G+Ck+G+ C+F H++
  Araha.6616s0011.1.p 339 GVAQCTHFSQHGICKFGPACRFDHSM 364
                          6788********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-43764IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2393765IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-103964IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-64165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-54364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61983111IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-683110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-684110IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-985110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-588110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.54131159IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5131158IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9133157IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5133158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4137156IPR000571Zinc finger, CCCH-type
SMARTSM003568.5E-6291318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854291319IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10293317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6294320IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4297317IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4337364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.695337365IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-8339363IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5340365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4343364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSLEW TSHGGETGLE GESYPERPDE PDCIYYLRTG VCGYGSRCRF  60
NHPRDRGAVI GGVRGEAGAL PERMGHPVCQ HFMRTGTCKF GASCKYHHPR QGGGGGSVAP  120
VSLSYLGYPL RPGEKECSYY LRTGQCKFGL TCRFNHPVPL AVQGPPQHQH QQQQQPQLQP  180
QLQTIYPTLQ SQSVPSSQQY GLVLTRPSLL PGSYLPSPYG PPMVLPPGMV PYSGWNPYQA  240
SLSAMPSPGT QPSIGSSSVY GITPLSPSAT AYTGTYQSGP SSNTSKEFPQ RPDQPECQYF  300
MRTGDCKFGS SCRYHHPVDA VPPKTGLVLS SIGLPLRPGV AQCTHFSQHG ICKFGPACRF  360
DHSMSSSLSY SPSASSLTDM PVAPYPIGSS SLSGSSAPVS SSNEPTTEAV TAAVSTSMVS  420
GLSRPEPAET SGDSASVSGS IEATTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6616s0011.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884577.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLD7L5G80.0D7L5G8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.3__645__AT3G06410.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]