PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6605s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 471aa    MW: 51661.2 Da    PI: 9.1014
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6605s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.2e-07150169626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+++ + G Ck G++C F H+
  Araha.6605s0005.1.p 150 CKYWKA-GNCKKGEQCEFLHS 169
                          ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.4E-5144170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6145169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5149169IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-5150169IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.08E-44174467IPR017986WD40-repeat-containing domain
SMARTSM003204.0E-5175214IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.6E-45177466IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004006.2E-4179214IPR001680WD40 repeat
PROSITE profilePS5029423.466182470IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.182182223IPR001680WD40 repeat
PROSITE patternPS006780201215IPR019775WD40 repeat, conserved site
PRINTSPR003202.5E-7201215IPR020472G-protein beta WD-40 repeat
SMARTSM0032074255292IPR001680WD40 repeat
SMARTSM003202.7E-5300337IPR001680WD40 repeat
PfamPF004001.9E-4302337IPR001680WD40 repeat
PROSITE profilePS5008212.346307346IPR001680WD40 repeat
PROSITE patternPS006780324338IPR019775WD40 repeat, conserved site
PRINTSPR003202.5E-7324338IPR020472G-protein beta WD-40 repeat
SMARTSM003208.7E-5340377IPR001680WD40 repeat
PfamPF004000.0017342376IPR001680WD40 repeat
PROSITE profilePS500829.239347386IPR001680WD40 repeat
PRINTSPR003202.5E-7364378IPR020472G-protein beta WD-40 repeat
SMARTSM0032084383424IPR001680WD40 repeat
SMARTSM0032010427464IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MYSMNHKAPR RYSQGRDFGV DRQQDFAVDI VPRRFGVPYE KRVKKGPYNG SRNLVWTSKE  60
FQASEGNRPR KNEAYRATNS PVSLQCVSNH PRKNEVYRSM NSPPVSGTGN RVSNQPRKNV  120
VDGSRSSSIL GSRVWRSGDN GSPKSRECVC KYWKAGNCKK GEQCEFLHSW SFFPGLVMVA  180
TLQGHKKDIK GIALPQGSDK LYSASGDGAL RIWDCHTGQC VHEINLQAEA GSLISEGPWV  240
FLGLPNAVKA YNVQTCKDLH LNGSVGGQVN AIAIGNGMLF AGTSSGSISV WKGTDTESDP  300
FKYLTSLEGH SDEVKCFVVG GQRLYSGSVD KTIKVWDLDT LQCIMTLRQH SDTVTSLLCW  360
DQYLLSSSLD GSIKVWGSSE SPNLKVIHTR SQEQSVHALC GLHDAEARPI IFCSYQNGTV  420
GIYDLPSFEE RGKMFSTHTI GTLTIGPEGL LFSGDKSGKV RAWSLSGSKV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B1e-16135429103393F-box/WD repeat protein 7
2ovq_B1e-16135429103393F-box/WD repeat protein 7
2ovr_B1e-16135429103393F-box/WD repeat protein 7
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.6605s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100641.10.0PREDICTED: zinc finger CCCH domain-containing protein 59-like
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLA0A087H5G00.0A0A087H5G0_ARAAL; Uncharacterized protein
STRINGA0A087H5G00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein