PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.6475s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 279aa MW: 31793.5 Da PI: 9.2799

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.6475s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	147.1	8.9e-46	8	134	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPt+eel+++yLk+ v gk+ ++ evi ++iy+++P+dLp + +e+ewyfF++r++k+ +g r++r+t++gyWkatg+d+++ Araha.6475s0002.1.p 8 PGFRFHPTEEELLDFYLKNMVYGKRSNV-EVIGFLNIYRHDPSDLPGLSRIGEREWYFFVPRERKHGNGGRPSRTTEKGYWKATGSDRKI 96 9**********************999.99***********7777899********************************* PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s ++++glkktLvfy+grap g+ktdWvm+e+r+ Araha.6475s0002.1.p 97 ISLsePKRVIGLKKTLVFYRGRAPGGSKTDWVMNEFRM 134 987557778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	52.437	6	152	IPR003441	NAC domain
SuperFamily	SSF101941	1.44E-54	7	152	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	8	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MGKEIELPGF RFHPTEEELL DFYLKNMVYG KRSNVEVIGF LNIYRHDPSD LPGLSRIGER 60 EWYFFVPRER KHGNGGRPSR TTEKGYWKAT GSDRKIISLS EPKRVIGLKK TLVFYRGRAP 120 GGSKTDWVMN EFRMPDNCSL PKDVVLCKIY RKATSMKVLE QRAEMEAKMN QTCPNSPLSS 180 SETISFVGKE ENMMTSFRVP QVTAMEDANK ILTLQENAKT EEKQRETETK EPSSSLKLPF 240 GSLPELQLPK AGGEWGDQLL SISPWLQNLT PIVNLLNW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-43	8	152	17	168	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.6475s0002.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF361804	0.0	AF361804.1 Arabidopsis thaliana At2g17040 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002884035.1	0.0	NAC domain-containing protein 35
Swissprot	Q10S65	2e-84	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	D7L8Q9	0.0	D7L8Q9_ARALL; ANAC036
STRING	fgenesh2_kg.3__3291__AT2G17040.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3899	28	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	0.0	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Araha.6475s0002.1.p

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]