PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.6003s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

HD-ZIP

Protein Properties

Length: 204aa MW: 23030 Da PI: 9.3302

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.6003s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	66	120	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L rq+ vWFqNrRa+ k Araha.6003s0002.1.p 66 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 120 78889************************************************98 PP
2	HD-ZIP_I/II	118.6	3.3e-38	66	154	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ Araha.6003s0002.1.p 66 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELRA 154 69*************************************************************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.5E-19	47	120	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.5E-18	49	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	62	122	IPR001356	Homeobox domain
SMART	SM00389	2.4E-17	64	126	IPR001356	Homeobox domain
CDD	cd00086	6.02E-16	65	123	No hit	No description
Pfam	PF00046	6.7E-16	66	120	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	97	120	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.4E-9	122	156	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.1E-21	122	165	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAILPENSSN LDLTISVPGF SSSPPSVSDE GSGGGRDQLK LDMNRLPSSE DGDDEEFSHD 60 GSAPPRKKLR LTREQSRLLE DSFRQNHTLN PKQKEALAKH LMLRPRQIEV WFQNRRARSK 120 LKQTEMECEY LKRWFGSLTE QNHRLHREVE ELRAMKVGPT TVNSASSLTM CPRCERVTTA 180 ASPSRAVVPV PAKKTFPPQE RDH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	122	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.6003s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ431181	0.0	AJ431181.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper (Athb17 gene).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002876750.2	1e-146	LOW QUALITY PROTEIN: homeobox-leucine zipper protein ATHB-17
Swissprot	Q8S9N6	1e-141	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	D7LLR2	1e-144	D7LLR2_ARALL; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_5000031	1e-145	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	1e-126	homeobox-leucine zipper protein 17

Link Out ? help Back to Top
Phytozome	Araha.6003s0002.1.p

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]