PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5856s0005.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 613aa    MW: 66970.1 Da    PI: 5.2292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5856s0005.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.11.5e-08256276526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C++Gd+C +aHg
  Araha.5856s0005.1.p 256 PCPEFRK-GSCSRGDTCEYAHG 276
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127963.0E-953123IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.97E-1356134IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.97357132IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445787IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.1E-1357132IPR020683Ankyrin repeat-containing domain
CDDcd002041.62E-1359165No hitNo description
PROSITE profilePS500889.56492127IPR002110Ankyrin repeat
SMARTSM002480.02192124IPR002110Ankyrin repeat
SMARTSM003564.9E-5251277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4255278IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6256276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.263256278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4284314IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.221286310IPR000571Zinc finger, CCCH-type
SMARTSM0035620286309IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 613 aa     Download sequence    Send to blast
MGVDELSHLK FSLLLESSAC NDLSGFKSLV EEEGLESIDG SGLWYGRRLG SKKMGFEERT  60
PLMIAALFGS KEVVDYIIST GLVDVNRSCG SDGATALHCA VSGLSANSFE IVTLLLKGSA  120
DPDSCDAYGN KPGDMIFPCL SPVFSARMKV LERLLKGNDD LNEVNGQEEG EREVEVEVEV  180
SVSPPRGSER KEYPVDPTLP DIKNGIYGTD EFRMYAFKIK PCSRAYSHDW TECPFVHPGE  240
NARRRDPRKY HYSCVPCPEF RKGSCSRGDT CEYAHGIFEC WLHPAQYRTR LCKDETNCSR  300
RVCFFAHKPE ELRPLYPSTG SGVPSPRSSF SSCNSSSAFD MGPISPLPIG ASTTPPLSPN  360
GVSSPMGGGK TWMNWPNITP PALQLPGSRL KSALNAREID FSEEMQSLTS PTTWNNTPMS  420
AASSPFSGKG MNRLAGGAMS PVNSLSDMFG TEDNTSGLQI RRSVINPQLH SNSLSSSPVG  480
ANSLFSMDSS TVLASRAAEF AKQRSQSFIE RSNGLNHHPA ISSMTTTCLN DWGSLDGKLD  540
WSVQGDELQK LRKSTSFRLR AGGMESRLTN EGTGLEEPDV SWVEPLVKEP QETRLAPVWM  600
EQSYMETEQT VA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5856s0005.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0207550.0AB020755.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1.
GenBankAY0541760.0AY054176.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankAY1033140.0AY103314.1 Arabidopsis thaliana AT5g58620/mzn1_70 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020887576.10.0zinc finger CCCH domain-containing protein 66
RefseqXP_020887584.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLD7MQF90.0D7MQF9_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.8__1801__AT5G58620.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein