PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.5397s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 628aa    MW: 69847.8 Da    PI: 9.9853
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.5397s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07525574147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                          r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Araha.5397s0001.1.p 525 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 574
                          6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864520579IPR017930Myb domain
SMARTSM007177.0E-7524577IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-10525575IPR009057Homeodomain-like
SuperFamilySSF466892.27E-15526607IPR009057Homeodomain-like
CDDcd116601.65E-16526576No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS  60
SSSSNNTSGN NEDQCAIKKE PLNGSNLMVE EETTTCGHDN NNAERSFFVS EILPKSHEMQ  120
SFNRSPSPLK EFHFGSSSGI TSDSSEKFET RELAYDESKI KNGDCYRSES NDKKSMLGGL  180
NFEAKLSRNV VAKDENHIGS GFRKPIPQNP SACSDDIDLH GKKNDDDENF SACYRTKSSR  240
STLRMGDRRI RKVLASKYCK APPKLKDTTV PNSDLDLKSD YYSKKHCLKS LRSERNYPIK  300
KRRYFDGYTA SQSEETSKNE GLSGSPRKAS AFLSSIACQK QPTFQSSRDS NVKLGIKSFR  360
VPELFIEIPE TATVGSLKRT VLEAVTSILG GGLRIGVLVH GKKVRDDSKM LLQTGLSLDT  420
LSDNLGFCLE PNPPQSTKPL SPEDSDFARP CNVPHTLTRC FPSPGKHAKP SNSVESDLDS  480
KPSAPNRGKT IYSRALIPVP LHAQALTVVP PRKTKRSEVA QRRIRRPFSV AEVEALVQAV  540
ERLGTGRWRD VKLRAFDNAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLT  600
AHAYWSQQQG KHQLLEGPQQ LETSLGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-575126144106Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.5397s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892405.10.0telomere repeat-binding protein 5 isoform X1
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLD7KH340.0D7KH34_ARALL; Predicted protein
STRINGAl_scaffold_0001_6980.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2