PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.51150s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | B3 | ||||||||
Protein Properties | Length: 216aa MW: 24840.7 Da PI: 5.4009 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.8 | 1.4e-16 | 2 | 74 | 18 | 95 |
--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +p +f+ +h + ++e++t l++ s +Wevk+ +++s+r lt+GWkeF+ a++ ++gD++vF++dg+ f +v+ Araha.51150s0001.1.p 2 IPVTFFLKHVERSNEQRTANLRSdASDTTWEVKI--DGRSRR--LTGGWKEFATAHDFRVGDIIVFRHDGDLVF--HVT 74 8999*99**656667789999987889*******..****99..9**********************8886555..555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.535 | 1 | 79 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.32E-12 | 2 | 74 | No hit | No description |
Pfam | PF02362 | 2.5E-11 | 2 | 69 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 9.22E-17 | 2 | 85 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.5E-9 | 2 | 79 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-19 | 2 | 89 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-8 | 151 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.63E-8 | 153 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.318 | 157 | 216 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.25E-9 | 157 | 216 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
NIPVTFFLKH VERSNEQRTA NLRSDASDTT WEVKIDGRSR RLTGGWKEFA TAHDFRVGDI 60 IVFRHDGDLV FHVTALGPSC CEIQYVQSCN DDDNLDDDQE DIRNLPMEQS LKTELEAEPS 120 LDDDDEDDNM GKLLRKKHVN KRIPETEAKC FSSDQSCFVA HVTDSNLRKD SLSLPRKFVR 180 TDGLNKGTNK IVLVNEGART WTLILKFRDS RRSFYM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.51150s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ515263 | 1e-81 | AJ515263.1 Arabidopsis thaliana mRNA for putative auxin response factor 25 (arf25 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020872309.1 | 1e-124 | LOW QUALITY PROTEIN: B3 domain-containing protein REM7 | ||||
Swissprot | Q8H2D0 | 1e-105 | REM7_ARATH; B3 domain-containing protein REM7 | ||||
TrEMBL | D7MB43 | 1e-118 | D7MB43_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pm.C_scaffold_7000788 | 1e-119 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31660.1 | 1e-102 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.51150s0001.1.p |
Publications ? help Back to Top | |||
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