PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5006s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 275aa MW: 31195.2 Da PI: 6.5385

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5006s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	79.7	3e-25	109	158	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl Araha.5006s0002.1.p 109 TALSKETVSRYFYMPITQAAMELNVGLTLLKRRCRELGIRRWPHRKLMSL 158 57999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.496	93	179	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-21	111	158	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
SLRYPLFDWE EDLLALQENS ASQGFPLTTT SLPLPDLEPL SEDVLNSYSS VSWNETEQNR 60 GDGASSEKKM ENGTVKETTK KRKINERHRE HSVRIMSDIT SYTTSAASTA LSKETVSRYF 120 YMPITQAAME LNVGLTLLKR RCRELGIRRW PHRKLMSLNT LISNVKELQK MEGEENAEKL 180 QDALEMLEKE KRTIEELPDL EFKDKTKRLR QACFKANHKR KKKRSLKSDQ FQVPSCSSSG 240 SVPSDESVDA AGMESDEEVK YLLCGFSSEL SNGL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00234	DAP	Transfer from AT1G74480	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5006s0002.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ056518	0.0	DQ056518.1 Arabidopsis thaliana RWP-RK domain-containing protein (At1g74480) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_177588.1	1e-169	RWP-RK domain-containing protein
Swissprot	Q9CA66	1e-170	RKD2_ARATH; Protein RKD2
TrEMBL	A0A178W9H3	1e-168	A0A178W9H3_ARATH; URP4
STRING	Bostr.3288s0094.1.p	1e-176	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74480.1	1e-143	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Araha.5006s0002.1.p

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]