PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4931s0007.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 390aa MW: 43864.5 Da PI: 6.2683 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.6 | 8.8e-08 | 328 | 361 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Araha.4931s0007.1.p 328 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 361 469*****************************87 PP | |||||||
2 | ELK | 29 | 2.5e-10 | 282 | 303 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++++++++E++ Araha.4931s0007.1.p 282 ELKHELKQGYKEKIVDIREEIL 303 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.0E-19 | 117 | 161 | IPR005540 | KNOX1 |
Pfam | PF03790 | 9.9E-18 | 120 | 160 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.3E-28 | 173 | 228 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.7E-20 | 178 | 227 | IPR005541 | KNOX2 |
Pfam | PF03789 | 8.9E-7 | 282 | 303 | IPR005539 | ELK domain |
SMART | SM01188 | 6.1E-4 | 282 | 303 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 9.969 | 282 | 302 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.726 | 302 | 365 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.13E-16 | 304 | 368 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-11 | 304 | 369 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.70E-11 | 305 | 366 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-25 | 309 | 366 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.1E-17 | 322 | 361 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MAFHNNHFNH FTDQQQHQPP APPPPQQQQQ HFHESAPPNW LLRSDNNFLN LHTAATSSDS 60 PSSAAANQWL SRSSSFLQRG GTANNNNETS GDVIEDVAGG EESTIGEKKE AERWQNARHK 120 AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ NVVAKYSTLE AAQGLLAGDD 180 KELDHFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSFTGVS PGEGTGATMS 240 EDEDEQVESD APLFDGSLDG LGFGPLVPTE SERSLMERVR QELKHELKQG YKEKIVDIRE 300 EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK 360 RNWHSNPSSS TVSKNKRRSN AGENSGRER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 305 | 369 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4931s0007.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | X92393 | 0.0 | X92393.1 A.thaliana mRNA for KNAT4 homeobox protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878249.1 | 0.0 | homeobox protein knotted-1-like 4 isoform X1 | ||||
Swissprot | P48001 | 0.0 | KNAT4_ARATH; Homeobox protein knotted-1-like 4 | ||||
TrEMBL | D7M3L6 | 0.0 | D7M3L6_ARALL; KNAT4 homeobox protein | ||||
STRING | fgenesh2_kg.6__1072__AT5G11060.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11060.1 | 0.0 | KNOTTED1-like homeobox gene 4 |
Link Out ? help Back to Top | |
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Phytozome | Araha.4931s0007.1.p |
Publications ? help Back to Top | |||
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