PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.48675s0008.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 689aa MW: 76144.4 Da PI: 7.8324

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.48675s0008.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.5	2.7e-28	420	471	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+++F++++kdAAk++gvc+T+LKr CRq+GI+RWP+Rkik++ Araha.48675s0008.1.p 420 AEKDITLDTLRQHFAGSLKDAAKNIGVCPTTLKRVCRQHGISRWPSRKIKKV 471 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.450.40	9.3E-5	211	332	IPR029016	GAF domain-like
SuperFamily	SSF55781	3.49E-6	213	334	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.291	407	491	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-25	424	471	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.41E-20	590	681	No hit	No description
Gene3D	G3DSA:3.10.20.240	5.1E-21	592	678	No hit	No description
PROSITE profile	PS51745	23.791	595	680	IPR000270	PB1 domain
SMART	SM00666	1.2E-25	595	680	IPR000270	PB1 domain
Pfam	PF00564	9.4E-20	596	679	IPR000270	PB1 domain
CDD	cd06407	1.10E-41	596	678	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006107	Biological Process	oxaloacetate metabolic process
GO:0006108	Biological Process	malate metabolic process
GO:0005515	Molecular Function	protein binding
GO:0050152	Molecular Function	omega-amidase activity

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MEESSNSAVV DFPENFMDQL LWEEEATQTD QALSSSSTGL KERVACAMGH LQEVMGEREL 60 LIQLWVPVET RSGRVLSTEE QPYSINTFSQ SQSLALYRDA SAGYSFAAEV GSEQLVGLPG 120 RVFLRRMPEW TPDVRFFRRE EYPRIGYARR YQVRASLALP LFQGTSGNCV AVMEMVTTHR 180 NLEYASQLHT ICHTLEAFDL RTSQTSIVPA SLKVTSSSSS RTEVASILQG ICSSHGLPLA 240 VTWAHQDSPS CLSALISASY AADQDSRCFL AACSEHHLLV GEGIAGRAFA TKKQCFATDV 300 AIFSKWSYPL SHYARMFDLH AALAVPILTR GNRTVQFVVE LFFPRDCLLD IQTQSLTLAS 360 QLNLRFQSSP HLMVDDNQIA QQVRDAATPP LTQEDPKGKQ VSFSSSSASS LENRKRKTKA 420 EKDITLDTLR QHFAGSLKDA AKNIGVCPTT LKRVCRQHGI SRWPSRKIKK VGHSLRKLQV 480 VMDSVEGVQG SLHLASFYSS FPQLQSSSFP LINPTQTVHV PPKSPPSSSG SQGSSGSSTC 540 CSSEEQQLGG FQNPSLSHPQ LLTLSSLHED QRPVRVTSSL PPLPSSTAPR KAKDGMKVKA 600 MFGDSMLRMS LQPHSRLTDL RREIAKRFGM DDVLTSNFSL KYLDDDQEWV LLTCDADLEE 660 CIQVYKSSIK ETIRILVHRP LSLPSFGS*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MEESSNSAVV DFPENFMDQL LWEEEATQTD QALSSSSTGL KERVACAMGH LQEVMGEREL  60
LIQLWVPVET RSGRVLSTEE QPYSINTFSQ SQSLALYRDA SAGYSFAAEV GSEQLVGLPG  120
RVFLRRMPEW TPDVRFFRRE EYPRIGYARR YQVRASLALP LFQGTSGNCV AVMEMVTTHR  180
NLEYASQLHT ICHTLEAFDL RTSQTSIVPA SLKVTSSSSS RTEVASILQG ICSSHGLPLA  240
VTWAHQDSPS CLSALISASY AADQDSRCFL AACSEHHLLV GEGIAGRAFA TKKQCFATDV  300
AIFSKWSYPL SHYARMFDLH AALAVPILTR GNRTVQFVVE LFFPRDCLLD IQTQSLTLAS  360
QLNLRFQSSP HLMVDDNQIA QQVRDAATPP LTQEDPKGKQ VSFSSSSASS LENRKRKTKA  420
EKDITLDTLR QHFAGSLKDA AKNIGVCPTT LKRVCRQHGI SRWPSRKIKK VGHSLRKLQV  480
VMDSVEGVQG SLHLASFYSS FPQLQSSSFP LINPTQTVHV PPKSPPSSSG SQGSSGSSTC  540
CSSEEQQLGG FQNPSLSHPQ LLTLSSLHED QRPVRVTSSL PPLPSSTAPR KAKDGMKVKA  600
MFGDSMLRMS LQPHSRLTDL RREIAKRFGM DDVLTSNFSL KYLDDDQEWV LLTCDADLEE  660
CIQVYKSSIK ETIRILVHRP LSLPSFGS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.48675s0008.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrate. {ECO:0000269\|PubMed:15375205}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC069558	0.0	AC069558.5 Genomic Sequence For Arabidopsis thaliana Clone T5G13 From Chromosome IV, complete sequence.
GenBank	AL035538	0.0	AL035538.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project).
GenBank	AL035539	0.0	AL035539.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F22I13 (ESSA project).
GenBank	AL161593	0.0	AL161593.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 89.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866792.1	0.0	protein NLP3
Swissprot	Q9SVF1	0.0	NLP3_ARATH; Protein NLP3
TrEMBL	D7MEX9	0.0	D7MEX9_ARALL; RWP-RK domain-containing protein
STRING	fgenesh1_pg.C_scaffold_7000014	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15287	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38340.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Araha.48675s0008.1.p

Publications ? help Back to Top
Doidy J, et al. "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run". BMC Genomics, 2016. 17: p. 92 [PMID:26843062]