PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.4848s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 671aa    MW: 75761 Da    PI: 6.4097
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.4848s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS367.51.8e-1122946671373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l++ L++cA+avs +d + a+ lL+r+++++s++gd ++Rla+yf++ L+arla+ ++++y al++++ts   +s+ l+a++++  v+P+
  Araha.4848s0002.1.p 294 LRTMLVSCAQAVSINDRRTADDLLSRIRQHSSSYGDGTERLAHYFANSLEARLAGIGTQVYTALSSKKTS---TSDMLKAYQTYISVCPF 380
                          5789**************************************************************9999...89*************** PP

                 GRAS  91 lkfshltaNqaIle..avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           k++ + aN+ I++  ++++++++HiiDf+is+G+QWp+L++ La R++++ +lRiTg++ p+ g   +e + etg+rLak++++++vpf
  Araha.4848s0002.1.p 381 KKIAIIFANHSIMRlaSIANAKTIHIIDFGISYGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGfrPAEGVIETGHRLAKYCQKFNVPF 470
                          ************872155677******************************************99************************* PP

                 GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                          e+n+ +a+++e+++le+L++k+gE +aVn+ ++  +llde+v+++s+rd+vLkl+++++P+v++      ++n++ F++rf e l +ys+
  Araha.4848s0002.1.p 471 EYNA-IAQKWETIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSS 559
                          ****.7************************************************************************************ PP

                 GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveees 355
                          lfd+ +++l re+  r++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF+++pl+++ +++ kll++  +  +++ v+++ 
  Araha.4848s0002.1.p 560 LFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVERPESYKQWQARAMRAGFRQIPLDKELVQKLKLLVESGYkTKEFDVDQDC 649
                          ***************************************************************************99888999******* PP

                 GRAS 356 gslvlgWkdrpLvsvSaW 373
                          ++l++gWk+r ++  S+W
  Araha.4848s0002.1.p 650 HWLLQGWKGRIVYGSSVW 667
                          ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.622268647IPR005202Transcription factor GRAS
PfamPF035146.1E-110294667IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MGSYSAGFPG SLDWFDFPSL GNGFYLNDQP LLDVGSVPPP PEPYSQPNLA SADADFSDSV  60
LKYINQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK YPVDDSDQPL TTTSLAQLTP  120
IPSNFVFQST STRTSSGHAV FGSSFSGDLA SNMFNDSELA LQFKKGMEEA SKFLPKSTQL  180
VIDVENYSPA LSSKEKDNSV PYRLTGKKSH WREEEHLAEE RSKKQSAVYV DETDELTEMF  240
DKILIFGEAK EQPVCILNEN FPKDPAKASS FGKIHKGEKP EASGNSYTKE TPDLRTMLVS  300
CAQAVSINDR RTADDLLSRI RQHSSSYGDG TERLAHYFAN SLEARLAGIG TQVYTALSSK  360
KTSTSDMLKA YQTYISVCPF KKIAIIFANH SIMRLASIAN AKTIHIIDFG ISYGFQWPSL  420
IHRLAWRRGS SCKLRITGIE LPQRGFRPAE GVIETGHRLA KYCQKFNVPF EYNAIAQKWE  480
TIKLEDLKLK EGEFVAVNSL FRFRNLLDET VAVHSPRDTV LKLIRKIKPD VFIPGILSGS  540
YNAPFFVTRF REVLFHYSSL FDMCDTNLTR EDPMRVMFEK EFYGREIMNV VACEGTERVE  600
RPESYKQWQA RAMRAGFRQI PLDKELVQKL KLLVESGYKT KEFDVDQDCH WLLQGWKGRI  660
VYGSSVWVPL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-472986678374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.4848s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053150.0AC005315.3 Arabidopsis thaliana chromosome 2 clone T9I4 map mi54, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882832.10.0scarecrow-like protein 33 isoform X2
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLD7LKB70.0D7LKB7_ARALL; Scarecrow transcription factor family protein
STRINGscaffold_401365.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein