PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4834s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 338aa MW: 38635 Da PI: 8.74 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2.1e-05 | 180 | 199 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+k+F+r n++ H+ Araha.4834s0001.1.p 180 FACSICSKTFNRYNNMQMHM 199 78*****************9 PP | |||||||
2 | zf-C2H2 | 10.9 | 0.0014 | 265 | 287 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk k + ++H +++ Araha.4834s0001.1.p 265 FSCGKCGKALAVKGDWRTHEKNC 287 89*****************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.79E-9 | 159 | 203 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.4E-5 | 180 | 199 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.45 | 180 | 207 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 180 | 202 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 182 | 202 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 228 | 260 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.99E-5 | 250 | 285 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.3E-4 | 251 | 285 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 190 | 265 | 285 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.538 | 285 | 318 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MSLMNPYEKG LSFESPSFIE WLEPPSSTSV LYRMNTRDAM SRSSHHQSQK NMLERSLFLY 60 QPQEPLNTSI QCLPLLNKLM ENKSRQALDD IKEESKDDVV TLQIGFPKYH RGSSDDDSDT 120 TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEITGSDVEV CGKRFWIPSP AQIHVGPMQF 180 ACSICSKTFN RYNNMQMHMW GHGSEFRKGA DSLKGTTQPA AILRLPCYCC AEGCKNNINH 240 PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK 300 HKRSLKDHIR SFGSGHSPLP SLSFDGFEED TECVTTE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 141 | 145 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. {ECO:0000305|PubMed:20541552}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4834s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF254448 | 0.0 | AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds. | |||
GenBank | AK118851 | 0.0 | AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22. | |||
GenBank | AY090918 | 0.0 | AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010488679.1 | 0.0 | PREDICTED: zinc finger protein WIP3-like | ||||
Swissprot | Q9SGD1 | 0.0 | ZWIP3_ARATH; Zinc finger protein WIP3 | ||||
TrEMBL | A0A178WMP3 | 0.0 | A0A178WMP3_ARATH; WIP3 | ||||
STRING | XP_010488679.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM239 | 28 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08290.1 | 0.0 | WIP domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Araha.4834s0001.1.p |
Publications ? help Back to Top | |||
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