PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.47425s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 171aa    MW: 18775.9 Da    PI: 7.5781
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.47425s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.13.4e-124181545
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                          ++ +rkq+NRe+ArrsR RK++ ++ L+  v  L +eN + 
  Araha.47425s0002.1.p 41 RKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLRKENAQI 81
                          5789**********************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.6E-1137116No hitNo description
SMARTSM003388.5E-1737101IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.61139102IPR004827Basic-leucine zipper domain
PfamPF001701.9E-94181IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-114193No hitNo description
CDDcd147023.96E-214292No hitNo description
PROSITE patternPS0003604459IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MNNKTEMGSS TSGNCSSVST TGLANSGSES DLRQRDLIDE RKRKRKQSNR ESARRSRMRK  60
QKHLDDLTAQ VTHLRKENAQ IVAGIAVTTQ HYVTIETEND ILRAQVLELN HRLQSLNEIV  120
ESSSSGFGME TGQGMIDGGF YDGVMNPMNL GFYNQPIMAS ASTAGDVFNC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14045RKRKRK
24061RKRKRKQSNRESARRSRMRKQK
35360RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.47425s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0237540.0AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBankAK3188290.0AK318829.1 Arabidopsis thaliana AT1G75390 mRNA, complete cds, clone: RAFL14-51-H21.
GenBankAK3189910.0AK318991.1 Arabidopsis thaliana AT1G75390 mRNA, complete cds, clone: RAFL21-81-N15.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887591.11e-122bZIP transcription factor 44
SwissprotC0Z2L51e-120BZP44_ARATH; bZIP transcription factor 44
TrEMBLD7KSN71e-121D7KSN7_ARALL; BZIP transcription factor family protein
STRINGscaffold_202483.11e-121(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-108basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]