PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.4378s0005.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25242.8 Da PI: 9.0414 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.4 | 2.4e-20 | 55 | 98 | 6 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + +rqvtfskRr g++KKA ELSvLC+a++ +i fs +++y + Araha.4378s0005.1.p 55 ENRRQVTFSKRRLGLFKKAAELSVLCGAQIGIITFSRVDRIYSF 98 579***********************************999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.0E-26 | 42 | 101 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.516 | 42 | 102 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.19E-22 | 43 | 111 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-19 | 44 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-20 | 54 | 98 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-19 | 64 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.3E-19 | 79 | 100 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MEDGEASTIT CLPTTKQNPL QNPSLLVNPK KETKLKTPKT TKGRQKIEIK KIILENRRQV 60 TFSKRRLGLF KKAAELSVLC GAQIGIITFS RVDRIYSFGN VDSLIDKYLR KAPVMLRSHP 120 GGNVANGEED NDGLMWWERA VESVPEEDIE EYKKALSVLR ENLLTRIYQM SGDRTVENLP 180 AFPNEMAMAD WKSTNENLMA RNDRGYAGNG GDLEFAFMSQ NGGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-15 | 43 | 111 | 2 | 68 | MEF2C |
5f28_B | 8e-15 | 43 | 111 | 2 | 68 | MEF2C |
5f28_C | 8e-15 | 43 | 111 | 2 | 68 | MEF2C |
5f28_D | 8e-15 | 43 | 111 | 2 | 68 | MEF2C |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.4378s0005.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC016529 | 0.0 | AC016529.7 Arabidopsis thaliana chromosome 1 BAC T10D10 genomic sequence, complete sequence. | |||
GenBank | AY141235 | 0.0 | AY141235.1 Arabidopsis thaliana MADS-box protein AGL60 mRNA, complete cds. | |||
GenBank | BT025647 | 0.0 | BT025647.1 Arabidopsis thaliana At1g72350 mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | DQ446421 | 0.0 | DQ446421.1 Arabidopsis thaliana clone pENTR221-At1g72350 MADS-box protein (At1g72350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002888870.1 | 1e-149 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | D7KZC6 | 1e-147 | D7KZC6_ARALL; MADS-box protein | ||||
STRING | scaffold_202161.1 | 1e-148 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4697 | 20 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72350.1 | 1e-138 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.4378s0005.1.p |