PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.40600s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 262aa    MW: 30318.5 Da    PI: 5.0216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.40600s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.9e-106893126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ++ e+C+ + +tG C++G++C+++H+
  Araha.40600s0001.1.p 68 PGVENCQVYIETGLCRFGSSCRYNHP 93
                          5789*********************8 PP
2zf-CCCH24.35.4e-08107127425
                           ---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                           ++C++f++ G Ck+G+ C F H
  Araha.40600s0001.1.p 107 PICNYFLK-GSCKFGSACIFQH 127
                           79******.***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0346794IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4836795IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-56994IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-66993IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-47392IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018103129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-5105127IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5107127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4108127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MADARENQQE SERRSDETES ISIEEPKEKE DEDENLQEQR QSSIGSSFPS SAKRKERMTQ  60
SSPYPVRPGV ENCQVYIETG LCRFGSSCRY NHPNQLPQEL PVRIDAPICN YFLKGSCKFG  120
SACIFQHIMD RNVAEPMYQS KIVPDSQMPD PRGHEAQENL QEQRQRDSTE RQGREAQENL  180
HQQRVQDMPE NHNVDAQQNL QEQRRISIEN ERAEARLRIE QIRPTVAFPL NEYIRARVAL  240
HELGFITDSQ GSFLGPNRYL GL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.40600s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373293e-70AC237329.1 Arabidopsis lyrata clone JGIFAFI-49G20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870540.11e-107trichohyalin
SwissprotQ9C7P44e-80C3H9_ARATH; Putative zinc finger CCCH domain-containing protein 9
TrEMBLD7KDV31e-158D7KDV3_ARALL; Uncharacterized protein
STRINGscaffold_103278.11e-159(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15746914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29570.11e-77C3H family protein