PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3975s0017.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 892aa    MW: 98431 Da    PI: 8.2928
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3975s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61e-085292954
                         HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          r RR+ri ++f  L++++P  a      K++ +++Le+A+ Y+k L
  Araha.3975s0017.1.p 52 ARERRHRISERFKILQSMVPGgA------KMDTVSMLEEAISYVKFL 92
                         699*****************966......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2374392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-1248106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-104996No hitNo description
Gene3DG3DSA:4.10.280.109.7E-114996IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-124998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-65392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525408.88E-15205317IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3001.0E-19208342IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136714.4E-13208316No hitNo description
Gene3DG3DSA:3.40.220.107.8E-4431475No hitNo description
SuperFamilySSF529491.08E-18481623No hitNo description
PROSITE profilePS5115412.328490669IPR002589Macro domain
SMARTSM005060.0012502637IPR002589Macro domain
Gene3DG3DSA:3.40.220.106.1E-16502621No hitNo description
PfamPF016614.3E-6525609IPR002589Macro domain
SuperFamilySSF541971.87E-39677855IPR011146HIT-like domain
PROSITE profilePS510849.374699808IPR011146HIT-like domain
Gene3DG3DSA:3.30.428.105.2E-13700805IPR011146HIT-like domain
PfamPF119692.6E-26702812No hitNo description
PROSITE patternPS008920781799IPR019808Histidine triad, conserved site
PfamPF162781.8E-9817871IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 892 aa     Download sequence    Send to blast
MDDFNLRGQN PNSSSTTSSS SSSFHGHKSE TGNTKRSRST STLSTDPQSV AARERRHRIS  60
ERFKILQSMV PGGAKMDTVS MLEEAISYVK FLKAQIWFHQ NMILFLNDHE NTSTCYSPGA  120
GECGPKLFGY DDDYAPIVET NSQGMPLTIM DSECTPWFDA TYSKHTRATR EIGETKETGS  180
PINDSDHREN MEVKIEESVE AEKAKQIVVL LIGPPGSGKS TFCDTVMRSS HRPWSRICQD  240
IINNGKAGTK AQCLKMATDS LREGKSVFID RCNLDREQRS EFIKLGGPGI EVHAVVLELS  300
AQVCISRSVK RTGHEGNLQG GRAAAVVNKM LHSKELPKVN EGFSRIMFCY SDADVENAVN  360
TYNKLGPMDT LPSGSFGEKK SDTKSQPGIM KFFKKVNALP GSSSNEAANT THNANEKTEN  420
FRISPAKLGS ADVVPTLAFP SISTADFQFD LEKASDIIVE KAEEFLPKLG TARLVLVDLS  480
QGSKILSLVK AKAAQKNIDS AKFFTFVGDI TKLHSEGGLH CNVIANATNW RLKPGGGGVN  540
AAIFKAAGPD LETATRVRAN TLVPGKAVVV PLPSTCPLHN AEGVTHVIHV LGPNMNPNRP  600
DNLNNDYTKG CKTLREAYTS LFEGFLSVVQ DQSKLPKRSN QTAVSDSGEG IKEDSERNKK  660
YKASQDKAVT NNLGSGSLED TRDSGKKMSK GWSTWALALH SIAMHPERHE NVVLEFSDNI  720
VVINDQYPKA RKHVLVLARQ ESLDGLEDVR KENLQLLQEM HNVGLNWVDR FQNEDASLIF  780
RLGYHSVPSM RQLHLHVISQ DFESDSLKNK KHWNSFTSSF FRDSVDVLEE VKSQGKANVA  840
SEDLLKGELR CNRCRSAHPN IPKLKSHVRS CRSQFPDHLL QNNRLVARPE T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A4e-9443663037231Basic helix-loop-helix, putative, expressed
5lw0_B4e-9443663037231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3975s0017.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1617460.0AL161746.2 Arabidopsis thaliana DNA chromosome 5, BAC clone T10O8 (ESSA project).
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011424.10.0LOW QUALITY PROTEIN: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.6__80__AT5G01310.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.10.0APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]