PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.39738s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 367aa    MW: 39181 Da    PI: 7.623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.39738s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12150194144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                           r++W++eEde l+ avkq+G g+W++I+++     Rt  q+  rw
  Araha.39738s0002.1.p 150 RKKWSAEEDEELIAAVKQHGEGSWALISKEAFeGERTTSQLSQRW 194
                           799***************************988899999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-15144201IPR009057Homeodomain-like
PROSITE profilePS5129418.385145202IPR017930Myb domain
SuperFamilySSF466892.3E-12146200IPR009057Homeodomain-like
SMARTSM007175.8E-11149200IPR001005SANT/Myb domain
PfamPF002493.8E-10150194IPR001005SANT/Myb domain
CDDcd116602.88E-13151194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MDWNELVKKT STGITNAREY QLLWRHLAYR DSLVPVENNA RLLDDDSDME CELEASPAVG  60
VDVVTEAVAH VKVMAASYVP SESDIPEDSM VEAPLTINIP YGLHRGAQEP SDSYWSSRGM  120
NITFPVFLPK AAEGHNGNGL ASSLAPRKRR KKWSAEEDEE LIAAVKQHGE GSWALISKEA  180
FEGERTTSQL SQRWGAIRRR IDTSNTSTQT GLQRTEAQMA NRAVSLAVGN RLPSKKLAVG  240
ITPMLSSGTI KGAQANGANS GSTLQRQQLS QPQIQALPRA TTSAPGAKSR VPAKKTTGNS  300
TSKVELMVTA NSVAAAALVG SCADKSLLDK PPEKESSTTV SPLAVAATES KPKDEATMTG  360
TGQKEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.39738s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171280.0AK117128.1 Arabidopsis thaliana At1g58220 mRNA for putative MYB-family transcription factor, complete cds, clone: RAFL16-66-J10.
GenBankAY5195470.0AY519547.1 Arabidopsis thaliana MYB transcription factor (At1g58220) mRNA, complete cds.
GenBankBT0059710.0BT005971.1 Arabidopsis thaliana At1g58220 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890874.10.0LOW QUALITY PROTEIN: nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBLA0A1P8AQS00.0A0A1P8AQS0_ARATH; Homeodomain-like superfamily protein
TrEMBLQ8GZ960.0Q8GZ96_ARATH; At1g58220
STRINGAT1G58220.10.0(Arabidopsis thaliana)
STRINGXP_010511098.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.10.0MYB_related family protein