PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.39200s0006.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 304aa    MW: 32657 Da    PI: 6.608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.39200s0006.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09156200554
                           HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  Araha.39200s0006.1.p 156 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 200
                           99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-14149210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14153210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6156200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MANNNNNPHD SISDPSPTDD FFEQILGLSN FSASSGSGLS GIGGGLSGVG PPPMMLQLGS  60
GDEGNHNHMG AIGGGGPVGF HNQMFPLGLS LDQGKGHGFL KPDGTGKRFQ DDVLDNRMKP  120
VFHGQPMSQP APPMPHQQST IRPRVRARRG QATDPHSIAE RLRRERIAER IRALQELVPT  180
VNKTDRAAMI DEIVDYVKFL RLQVKVLSMS RLGGAGAVAP LVTEMPLSSS TEDETQAVWE  240
KWSNDGTERQ VAKLMEENVG AAMQLLQSKA LCIMPISLAM AIYHSQPPDT SSSIVKPEMN  300
PPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160165RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.39200s0006.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2516920.0AF251692.2 Arabidopsis thaliana putative transcription factor BHLH7 mRNA, complete cds.
GenBankAY0544690.0AY054469.1 Arabidopsis thaliana Unknown protein (At1g03040; F10O3.14) mRNA, complete cds.
GenBankAY1146330.0AY114633.1 Arabidopsis thaliana unknown protein (At1g03040) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867758.10.0transcription factor bHLH7
SwissprotQ93Y001e-179BH007_ARATH; Transcription factor bHLH7
TrEMBLD7KCA70.0D7KCA7_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.1__235__AT1G03040.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-173bHLH family protein