PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.37800s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 26128.5 Da PI: 8.2359 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.9 | 8.4e-44 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC+++Cv+apyfp +qp+kfa+vhk+FGasnv kll++l ++reda++sl+yeAear+rdPvyG+vg+i+ lq++l+q Araha.37800s0001.1.p 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFAYVHKVFGASNVAKLLNELASNHREDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQ 95 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 l+++l+ +k+e Araha.37800s0001.1.p 96 LQQDLENAKKE 106 ******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 3.6E-97 | 4 | 237 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 26.738 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.1E-43 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MASSSSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFAYVH KVFGASNVAK LLNELASNHR 60 EDAVNSLFYE AEARLRDPVY GCVGLISILQ HRLKQLQQDL ENAKKELATY VGPQAMLPIL 120 QPPQPHFMSP PPQPQRPSSS SASVLTQHHH NLLPMMGIPT GQLYHQQQQQ MFEAQQLAAV 180 AREQQNEMFR AYGGGGGSSS PHHQNQAQAE ILRFNNGFDS VPAGSVTVTG FNQLSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-49 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-49 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.37800s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB010700 | 0.0 | AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21. | |||
GenBank | AB164303 | 0.0 | AB164303.1 Arabidopsis thaliana ASL1 mRNA for ASYMMETRIC LEAVES2-like gene 1 protein, complete cds. | |||
GenBank | AB473834 | 0.0 | AB473834.1 Arabidopsis thaliana ASL1 mRNA for ASYMMETRIC LEAVES2-like 1 protein, complete cds. | |||
GenBank | BT044058 | 0.0 | BT044058.1 Arabidopsis thaliana unknown protein (At5g66870) mRNA, complete cds. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280835.1 | 1e-151 | LOB domain-containing protein 36 | ||||
Swissprot | Q9FKZ3 | 1e-148 | LBD36_ARATH; LOB domain-containing protein 36 | ||||
TrEMBL | A0A178UE79 | 1e-150 | A0A178UE79_ARATH; LBD36 | ||||
STRING | Cagra.20099s0001.1.p | 1e-151 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8008 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-131 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Araha.37800s0001.1.p |
Publications ? help Back to Top | |||
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