PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.36543s0001.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C3H

Protein Properties

Length: 718aa MW: 78119 Da PI: 6.4077

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.36543s0001.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	302	322	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Araha.36543s0001.1.p 302 PCPDFRK-GACRRGDMCEYAHG 322 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	1.01E-16	36	179	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-17	38	180	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.28E-14	44	178	No hit	No description
Pfam	PF12796	1.1E-10	81	154	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0078	86	116	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	16.335	86	189	IPR020683	Ankyrin repeat-containing domain
PRINTS	PR01415	3.8E-5	87	102	IPR002110	Ankyrin repeat
SMART	SM00248	0.0039	121	153	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.476	121	156	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.8E-5	140	154	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	297	323	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.1E-4	302	324	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.3E-5	302	322	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	302	324	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.963	332	356	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	68	332	355	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MCCGSDRLNQ IVSSSPISFE DNNLVTNTDM NHLTVETEDT FASLLELAAN NDVEGVRLSI 60 ERDPSCVDEA GLWYGRQKGS KAMVNDQRTP LMVAATYGSI DVIKLIVSLT DANVNRACGN 120 DQTTALHCAA SGGAVNAIQV VKLLLAAGAD LNLLDAEGQR AGDVIVVPPK LEGVKLMLQE 180 LLSADGSSTA ERNLRVVTNV PNRSSSPSHS PTGENGGSGS GSPLGSPFKL KSTDFKKEYP 240 VDPSLPDIKN SIYATDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC 300 VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTGCARRVCF FAHTPEELRP 360 LYASTGSAVP SPRSNADYAA ALSLLPGSPS GVSVMSPLSP SAAGNGMSHS NMAWPQPNVP 420 ALHLPGSNLQ SSRLRSSLNA RDIPTDEFNM LADYEQQQLL NEYSNSLSRS GRMKSMPTSN 480 LEDLFSAEGS SSPRFTDSAL ASAVFSPTHK SAVFNQFQQQ QQQQQSMLSP INTSFSSPKS 540 VDHSLFSGGG RMSPRNVVEP ISPMSSRVSM LAQCVKQQQQ QQQQQQQQQQ QQQHQFRSLS 600 SRELRTNSSP IVGSPVNNNS WSSKWGSSNG QPDWGMSSEA LGKLRSSSSF DGDEPDVSWV 660 QSLVKESPTE AKEKAATSSS GEHVMKQPNP VEPVMDHAGL EAWIEQMQLD QLVAQQN*

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MCCGSDRLNQ IVSSSPISFE DNNLVTNTDM NHLTVETEDT FASLLELAAN NDVEGVRLSI  60
ERDPSCVDEA GLWYGRQKGS KAMVNDQRTP LMVAATYGSI DVIKLIVSLT DANVNRACGN  120
DQTTALHCAA SGGAVNAIQV VKLLLAAGAD LNLLDAEGQR AGDVIVVPPK LEGVKLMLQE  180
LLSADGSSTA ERNLRVVTNV PNRSSSPSHS PTGENGGSGS GSPLGSPFKL KSTDFKKEYP  240
VDPSLPDIKN SIYATDEFRM YSFKVRPCSR AYSHDWTECP FVHPGENARR RDPRKFHYSC  300
VPCPDFRKGA CRRGDMCEYA HGVFECWLHP AQYRTRLCKD GTGCARRVCF FAHTPEELRP  360
LYASTGSAVP SPRSNADYAA ALSLLPGSPS GVSVMSPLSP SAAGNGMSHS NMAWPQPNVP  420
ALHLPGSNLQ SSRLRSSLNA RDIPTDEFNM LADYEQQQLL NEYSNSLSRS GRMKSMPTSN  480
LEDLFSAEGS SSPRFTDSAL ASAVFSPTHK SAVFNQFQQQ QQQQQSMLSP INTSFSSPKS  540
VDHSLFSGGG RMSPRNVVEP ISPMSSRVSM LAQCVKQQQQ QQQQQQQQQQ QQQHQFRSLS  600
SRELRTNSSP IVGSPVNNNS WSSKWGSSNG QPDWGMSSEA LGKLRSSSSF DGDEPDVSWV  660
QSLVKESPTE AKEKAATSSS GEHVMKQPNP VEPVMDHAGL EAWIEQMQLD QLVAQQN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.36543s0001.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY037232	0.0	AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	AY093957	0.0	AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	U90439	0.0	U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_565962.1	0.0	CCCH-type zinc finger protein with ARM repeat domain-containing protein
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A178VPY5	0.0	A0A178VPY5_ARATH; OXS2
STRING	AT2G41900.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Araha.36543s0001.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]