PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.3437s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 609aa MW: 69055.8 Da PI: 7.051 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.7e-09 | 408 | 445 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Araha.3437s0001.1.p 408 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 445 554459******************************88 PP | |||||||
2 | BELL | 104.1 | 9.4e-34 | 266 | 337 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+kakLls+lee+++rY +y+eq+++ ++ Fea++g+g+a++Yt+lA++a+SrhFrcLkd +++qi Araha.3437s0001.1.p 266 EFMELQKRKAKLLSMLEELKRRYGHYREQMRVAAAGFEAAVGVGAAEIYTALASRAMSRHFRCLKDGLVGQI 337 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 2.7E-42 | 191 | 333 | IPR006563 | POX domain |
SMART | SM00574 | 5.7E-68 | 197 | 335 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.017 | 386 | 449 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.72E-10 | 389 | 450 | No hit | No description |
SMART | SM00389 | 5.6E-9 | 389 | 453 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.08E-17 | 390 | 457 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.6E-28 | 392 | 456 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.0E-18 | 406 | 445 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MARDQFYGHN NHHHQEQQHQ MINQIQGFDE TNQNPTDHHH HYNHQIFGSN SNMGMMLDFS 60 KQQQIRMTSG PDHHHQTSGG TDQNQLLEDS SSTMRLCNVN NDFPSEVNDE RPPQRPSQGL 120 SLSLSSSNPT SISLQSFELR PQQQPQGYSG KSTHHQNLQH TQMMMMMMNS HHQNNNNNNN 180 HQHHNHHQFQ IGSSKYLSPA QELLSEFCSL GVKESDEEVM MMKIKRKQKG KQQEEWDTSH 240 KNNNDQHDQS ATTSSKKHVP PLHSLEFMEL QKRKAKLLSM LEELKRRYGH YREQMRVAAA 300 GFEAAVGVGA AEIYTALASR AMSRHFRCLK DGLVGQIQAT SQALGEREED NRAVSIAARG 360 ETPRLRLLDQ ALRQQKSYRQ MTLVDAHPWR PQRGLPERAV TTLRAWLFEH FLHPYPSDVD 420 KHILARQTGL SRSQVSNWFI NARVRLWKPM IEEMYCEETR GEQMEITNPM MIDTKPDPNQ 480 LIRVEPESLS SIVTNPTSKT GHSSNHGTTS LGSTFDFSLY GNQAVTYAGE GGPRGDVSLT 540 LGLQRNDGNG GVSLALSPVT AQGGQLFYGR DHIEEGPVQY SASMLDDDQV QNLPYRNLMG 600 AQLLHDIV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 4e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 4e-15 | 395 | 453 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.3437s0001.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATU39944 | 0.0 | U39944.2 Arabidopsis thaliana homeobox protein (BEL1) mRNA, complete cds. | |||
GenBank | AY049237 | 0.0 | AY049237.1 Arabidopsis thaliana AT5g41410/MYC6_12 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020874297.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Swissprot | Q38897 | 0.0 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | D7MIV5 | 0.0 | D7MIV5_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.7__3270__AT5G41410.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5866 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 0.0 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.3437s0001.1.p |
Publications ? help Back to Top | |||
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