PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.34150s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HD-ZIP
Protein Properties Length: 743aa    MW: 83031.2 Da    PI: 5.5701
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.34150s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651e-203893156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  Araha.34150s0001.1.p 38 KKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSDELGLKPRQVKFWFQNRRTQMK 93
                          688999***********************************************998 PP
2START145.45.3e-462494802206
                           HHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS...........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT CS
                 START   2 laeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv..........dsgealrasgvvdmvlallveellddkeqW 72 
                           +a ++ qel k+ + eep+W k            +n++e+++ f+              ++ ea++a +vv+m++ +lv  +l+   +W
  Araha.34150s0001.1.p 249 FAVSCVQELTKMCDTEEPLWIKKKsdkiggeiLCLNEEEYMRLFP---WpmenhnnkgdFHREASKANAVVIMNSITLVDAFLNAD-KW 333
                           67899****************999666666554456666666664...03456779999***************************.** PP

                           -TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--....-TTSEE- CS
                 START  73 detla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppe...sssvvRa 145
                           +e++     +a+t++ issg     g l lm+aelq+lsplvp R+ +f+Ry +q  + g w+ivd  +d  ++q++p    ++++ R 
  Araha.34150s0001.1.p 334 SEMFCsivaRAKTVQIISSGvsgasGSLLLMFAELQVLSPLVPtREAYFLRYVEQnAETGNWAIVDFPIDsfHDQMQPLniiTHEYKR- 421
                           ****99999**********************************************99***********99445677777777888877. PP

                           EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                 START 146 ellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                              pSg++i++++ng+s+v wvehv+++++++h+ +   vksg+a+ga++w+  lqrqce+
  Araha.34150s0001.1.p 422 --KPSGCIIQDMPNGYSQVKWVEHVEVDEKHVHETFAEYVKSGMAFGANRWLDVLQRQCER 480
                           ..*********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.36E-202796IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-2132101IPR009057Homeodomain-like
PROSITE profilePS5007117.673595IPR001356Homeobox domain
SMARTSM003891.7E-183699IPR001356Homeobox domain
PfamPF000463.5E-183893IPR001356Homeobox domain
CDDcd000869.48E-193896No hitNo description
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PROSITE profilePS5084842.27239483IPR002913START domain
SuperFamilySSF559611.15E-29240482No hitNo description
CDDcd088753.87E-108243479No hitNo description
SMARTSM002347.7E-27248480IPR002913START domain
PfamPF018522.9E-38249480IPR002913START domain
SuperFamilySSF559613.98E-15517727No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
SAGGSFGSGS EQAEDPKFGN ESDVNELQDD EQPPPAKKKR YHRHTNRQIQ EMEALFKENP  60
HPDDKQRKRL SDELGLKPRQ VKFWFQNRRT QMKAQQDRNE NVMLRAENDN LKSENCHLQA  120
ELRCLSCPSC GGPTVLGDIP FNELHIENCR LREELDRLCC IASRYTGRPM QSMPSSQPLI  180
NPSPMLPHHQ PSLELDMSVY AGNFPEQSCT DMMMLPPQDT TCFFPDQTVN NNNSNMLLAD  240
EEKVIAMEFA VSCVQELTKM CDTEEPLWIK KKSDKIGGEI LCLNEEEYMR LFPWPMENHN  300
NKGDFHREAS KANAVVIMNS ITLVDAFLNA DKWSEMFCSI VARAKTVQII SSGVSGASGS  360
LLLMFAELQV LSPLVPTREA YFLRYVEQNA ETGNWAIVDF PIDSFHDQMQ PLNIITHEYK  420
RKPSGCIIQD MPNGYSQVKW VEHVEVDEKH VHETFAEYVK SGMAFGANRW LDVLQRQCER  480
IASLMARNIT DLGVISSAEA RRNIMRLSQR LVKTFCVNMS TAYGQSWTAL SETTKDTVRI  540
TTRKMCEPGQ PTGVVLCAVS TTWLPFSHHQ VFDLIRDQHH QSLLEVLFNG NSPHEVAHIA  600
NGSHPGNCIS LLRINVASNS WHNVELMLQE SCIDNSGSLI VYSTVDVDSI QLAMNGEDSS  660
NIPILPLGFS IVPVNPPEGI SVNSNSPPSC LLTVGIQVLA SNVPTAKPNL STVTTINNHL  720
CATVNQITSA LSSTITPAIA SSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16368DKQRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.34150s0001.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133940.0AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871346.10.0homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLA0A178UFV30.0A0A178UFV3_ARATH; HDG5
STRINGAT5G46880.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]