PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3403s0031.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 627aa    MW: 66203.2 Da    PI: 9.7332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3403s0031.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.5e-09198242144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                          r++W++eEde l  avk+ G g+W+ I +       Rt+ q+  rw
  Araha.3403s0031.2.p 198 RKKWSAEEDEELFAAVKRCGEGNWAHIVKgdFR-GERTASQLSQRW 242
                          789***********************9652134.478888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.825193249IPR017930Myb domain
SuperFamilySSF466896.89E-12195248IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-12195247IPR009057Homeodomain-like
SMARTSM007172.4E-9197248IPR001005SANT/Myb domain
PfamPF002491.7E-6198242IPR001005SANT/Myb domain
CDDcd116602.69E-14199247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 627 aa     Download sequence    Send to blast
MVDDTSSNSR KRIITEGDIA TLLQRYDMKT ILKMLQEMAY YSQIKMDWNE LVKKTTTGIT  60
NAREYQLLWR HLSYGHPLLP VEDDAQPLDD DSDMECELEA SPAVSHEASV EAIAHVKVMA  120
ASYVPNESDI LDNSTVEAPL TINIPYVLPE GSQEPSESPW SSRGMNITFP VCLQKVTSTE  180
GMNGNGSAGN SMAFRKKRKK WSAEEDEELF AAVKRCGEGN WAHIVKGDFR GERTASQLSQ  240
RWALIRKRCD TSTSVSQSGL QPTEAQIAVN HAISLALGNR PPSKKLAIGV MPTTSSCSIT  300
EPEANGGSSS QGQQQFKPIV QALPRAGTSL PGSKSRVVKK STASSTSRSN LMVTANSVAA  360
AACMGDVLTA ASGPKVEPGK TDAPLVPKTK PVKNASTACM PRPSGSLSMP KVEPGTSVAA  420
SSIIKAVGPA NMRPLANGEL KHVTASSSSN KLPLMAPRSE GSTMLSASAP LASPSRIVSN  480
QRVFAASVPA TVLQPKPTAE TVTCKPDGGQ KGKARGNEAS SSAAIQPHQM TSINSEIRQG  540
KQATQAQSPN LLPRKVPVVR AAVHCATNHK LVDKPSDKTV VPIRGAGSQS KAKDEVNSKV  600
GPAIKVSSVC GKPLEVATVA GTGQGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195199KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3403s0031.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195460.0AY519546.1 Arabidopsis thaliana MYB transcription factor (At1g09710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868169.10.0uncharacterized protein LOC9328581 isoform X1
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGfgenesh2_kg.1__1026__AT1G09710.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein