PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3403s0031.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 634aa    MW: 67063.3 Da    PI: 9.9322
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3403s0031.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.6e-09205249144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                          r++W++eEde l  avk+ G g+W+ I +       Rt+ q+  rw
  Araha.3403s0031.1.p 205 RKKWSAEEDEELFAAVKRCGEGNWAHIVKgdFR-GERTASQLSQRW 249
                          789***********************9652134.478888887777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.825200256IPR017930Myb domain
SuperFamilySSF466896.96E-12202255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-12202254IPR009057Homeodomain-like
SMARTSM007172.4E-9204255IPR001005SANT/Myb domain
PfamPF002491.7E-6205249IPR001005SANT/Myb domain
CDDcd116602.75E-14206254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MRKNTTKMVD DTSSNSRKRI ITEGDIATLL QRYDMKTILK MLQEMAYYSQ IKMDWNELVK  60
KTTTGITNAR EYQLLWRHLS YGHPLLPVED DAQPLDDDSD MECELEASPA VSHEASVEAI  120
AHVKVMAASY VPNESDILDN STVEAPLTIN IPYVLPEGSQ EPSESPWSSR GMNITFPVCL  180
QKVTSTEGMN GNGSAGNSMA FRKKRKKWSA EEDEELFAAV KRCGEGNWAH IVKGDFRGER  240
TASQLSQRWA LIRKRCDTST SVSQSGLQPT EAQIAVNHAI SLALGNRPPS KKLAIGVMPT  300
TSSCSITEPE ANGGSSSQGQ QQFKPIVQAL PRAGTSLPGS KSRVVKKSTA SSTSRSNLMV  360
TANSVAAAAC MGDVLTAASG PKVEPGKTDA PLVPKTKPVK NASTACMPRP SGSLSMPKVE  420
PGTSVAASSI IKAVGPANMR PLANGELKHV TASSSSNKLP LMAPRSEGST MLSASAPLAS  480
PSRIVSNQRV FAASVPATVL QPKPTAETVT CKPDGGQKGK ARGNEASSSA AIQPHQMTSI  540
NSEIRQGKQA TQAQSPNLLP RKVPVVRAAV HCATNHKLVD KPSDKTVVPI RGAGSQSKAK  600
DEVNSKVGPA IKVSSVCGKP LEVATVAGTG QGV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202206KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3403s0031.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195460.0AY519546.1 Arabidopsis thaliana MYB transcription factor (At1g09710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868169.10.0uncharacterized protein LOC9328581 isoform X1
TrEMBLD7KJT30.0D7KJT3_ARALL; DNA binding protein
STRINGfgenesh2_kg.1__1026__AT1G09710.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48232751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.10.0MYB_related family protein