PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3367s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 171aa    MW: 18629.3 Da    PI: 9.6708
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3367s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.0007186108123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp+Cg  F+    L  H+r+H
  Araha.3367s0002.1.p  86 HTCPICGLDFPIGQALGGHMRKH 108
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.04E-735108No hitNo description
PfamPF139128.3E-93659IPR007087Zinc finger, C2H2
PROSITE profilePS501579.0783760IPR007087Zinc finger, C2H2
SMARTSM003552.93759IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.51286113IPR007087Zinc finger, C2H2
SMARTSM003550.2286108IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-886109IPR007087Zinc finger, C2H2
PROSITE patternPS00028088108IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MVAGIDNLDL TADTAANCLM LLSKVGEHDG GKKRRVFRCK TCKRDFFSFQ ALGGHRASHT  60
KLINSDDKSL PGSLKKKPKT TTTSSHTCPI CGLDFPIGQA LGGHMRKHRN EKEQEKASNE  120
LVTRSFLPET TTVTTLKKSS SGKRVACLDL DSTSVESLVN TELELGRTMY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379LKKKPKT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00393DAPTransfer from AT3G46070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3367s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6983080.0HQ698308.1 Arabidopsis thaliana ecotype Landsberg erecta chromosome 3 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002877452.11e-109zinc finger protein ZAT8
SwissprotQ9LX855e-77ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLD7LMV01e-108D7LMV0_ARALL; Zinc finger family protein
STRINGscaffold_501490.11e-108(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.12e-72C2H2 family protein