PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3284s0025.2.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARF
Protein Properties Length: 447aa    MW: 50025.1 Da    PI: 10.0529
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3284s0025.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.55e-187703398
                         -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                   B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                         +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   + +++ l+v+v+r
  Araha.3284s0025.2.p  7 TQELVARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGETGDLRVGVRR 70
                         5689***********************************************..3489999***998 PP
2Auxin_resp98.21.2e-3296175183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          a+ha++t+++F v+Y+Pr   s+F+++v+k++ a+k+ +s+GmRf+m+fe+e+s+er ++Gt++g  dl++ +Wp SkWrsL+
  Araha.3284s0025.2.p  96 ASHAVTTTTIFVVFYKPRI--SQFIISVNKYMVAMKNGFSLGMRFRMRFEGEESPERIFTGTIIGSGDLSS-QWPASKWRSLQ 175
                          689***************8..9**********************************************777.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0017172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435172IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-22299IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-23485IPR015300DNA-binding pseudobarrel domain
CDDcd100172.71E-13470No hitNo description
PfamPF023621.1E-15670IPR003340B3 DNA binding domain
PfamPF065079.7E-3096175IPR010525Auxin response factor
PfamPF023093.6E-15321422IPR033389AUX/IAA domain
SuperFamilySSF542772.21E-15330411No hitNo description
Gene3DG3DSA:3.10.20.2403.3E-4334409No hitNo description
PROSITE profilePS5174527.848335427IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MTQPTPTQEL VARDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDAFVFLRGE  60
TGDLRVGVRR LAKQQSTMPV SVISSQSMRL GVLATASHAV TTTTIFVVFY KPRISQFIIS  120
VNKYMVAMKN GFSLGMRFRM RFEGEESPER IFTGTIIGSG DLSSQWPASK WRSLQIQWDE  180
PSSIQRPNKV SPWEIEPFSP SALTPAPTQQ QSKSKRSRPI GSSISEITGS PVASNFLSSF  240
PQSHESNPSV KLLFHDTATE RNSNKSVFSS GLQCKKTEAP VTSCCRLFGF DLTSKPASAP  300
IPPDKQLISV DSTPKCQDPN SSNSPKEQKQ QTSTRSRIKV QMQGTAVGRA VDLTLLRSYD  360
ELIKELEKMF EIEGELSPKD KWAIVFTDDE GDMMLVGDDP WNEFCKMAKK LFIYPSDEVK  420
KLSSKSLLRD EGTIVNLKSD QRTIHV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A7e-921199155356Auxin response factor 1
4ldw_A7e-921199155356Auxin response factor 1
4ldw_B7e-921199155356Auxin response factor 1
4ldx_A8e-921199155356Auxin response factor 1
4ldx_B8e-921199155356Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3284s0025.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2299240.0AK229924.1 Arabidopsis thaliana mRNA for ARF1 family auxin responsive transcription factor like protein, complete cds, clone: RAFL22-28-H22.
GenBankAY6697910.0AY669791.1 Arabidopsis thaliana clone C105346 ARF11 (At2g46530) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020882703.10.0auxin response factor 11
SwissprotQ9ZPY60.0ARFK_ARATH; Auxin response factor 11
TrEMBLD7LEK50.0D7LEK5_ARALL; Auxin response factor
STRINGscaffold_403621.10.0(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.20.0auxin response factor 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]