PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.3284s0019.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | Dof | ||||||||
Protein Properties | Length: 357aa MW: 39003.9 Da PI: 9.3453 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.7 | 6.1e-39 | 64 | 125 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss Araha.3284s0019.2.p 64 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 125 6899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-25 | 63 | 113 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.9E-33 | 66 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.901 | 68 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 70 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence Send to blast |
MMNVKPMEQI MIPNNNTHQS NTTSNARPNT ILTSNGVSSA GATVSGVSNN NNNTAVVAER 60 KARPQEKLNC PRCNSTNTKF CYYNNYSLTQ PRYFCKGCRR YWTEGGSLRN VPVGGSSRKN 120 KRSSSSNILQ TTPSSLGLTT TLPDLNPPIL FSNQIHNKSK GSSQDLNLLS FPVMQDQHQH 180 HVHMSQFLQM PKMEGNGNIT HQQQPSSSSS LYGSSSSPVS ALELLRTGVN VSARSGINSF 240 MPSGSMMDSN TVLYTSSGFP TMVDYKPSNL SFSTDHQGLG HNSNNRSEAL HNDHHQQGRV 300 LFPFGDQMKE LSSSITQEVD HDDNQQQKSH GNNNNSSPNN GYWTGMFSTT GGGSSW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00319 | DAP | Transfer from AT2G46590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.3284s0019.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006418 | 0.0 | AC006418.4 Arabidopsis thaliana chromosome 2 clone F13A10 map CIC06C03, complete sequence. | |||
GenBank | AJ237810 | 0.0 | AJ237810.1 Arabidopsis thaliana dag2 gene, exons 1-2. | |||
GenBank | BT003328 | 0.0 | BT003328.1 Arabidopsis thaliana putative DOF zinc finger protein (At2g46590) mRNA, complete cds. | |||
GenBank | BT008842 | 0.0 | BT008842.1 Arabidopsis thaliana At2g46590 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002880253.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X1 | ||||
Refseq | XP_020882707.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X2 | ||||
Refseq | XP_020882708.1 | 0.0 | dof zinc finger protein DOF2.5 isoform X2 | ||||
Swissprot | Q9ZPY0 | 0.0 | DOF25_ARATH; Dof zinc finger protein DOF2.5 | ||||
TrEMBL | D7LF65 | 0.0 | D7LF65_ARALL; Uncharacterized protein | ||||
STRING | scaffold_403629.1 | 0.0 | (Arabidopsis lyrata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46590.1 | 1e-157 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.3284s0019.2.p |
Publications ? help Back to Top | |||
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