PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.32640s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 94aa    MW: 10830.3 Da    PI: 10.9154
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.32640s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_123.11.6e-071550439
                          XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39
                           k+ +rk +NRe+ArrsR++K++ +e    ++ +Le
  Araha.32640s0004.1.p 15 EKKRKRKLSNRESARRSRLKKQKLMEDTIHEISNLE 50
                          5999******************99886554444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.7E-71152No hitNo description
SMARTSM003380.00551275IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.5771452IPR004827Basic-leucine zipper domain
PfamPF077162.2E-61453IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.15E-71662No hitNo description
CDDcd147028.29E-91761No hitNo description
PROSITE patternPS0003601934IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006521Biological Processregulation of cellular amino acid metabolic process
GO:0009267Biological Processcellular response to starvation
GO:0009617Biological Processresponse to bacterium
GO:0009651Biological Processresponse to salt stress
GO:0009901Biological Processanther dehiscence
GO:0010182Biological Processsugar mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MANAERTSSG SDIDEKKRKR KLSNRESARR SRLKKQKLME DTIHEISNLE RRIKENSERC  60
RVNANAEIAV GDCRRRPWKL SCDSLQPIAS FKT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11421EKKRKRKL
21520KKRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the C-box-like motif (5'-TGCTGACGTCA-3') and G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of gene promoters involved in sugar signaling. Activated by low energy stress both at transcriptional and post-transcriptional mechanisms. Promotes dark-induced senescence and participates in the transcriptional reprogramming of amino acid metabolism during the dark-induced starvation response (PubMed:20080816, PubMed:21278122). Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter (PubMed:24243147). {ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122, ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.32640s0004.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Reversibly repressed by glucose and mannose. Slowly induced by Pseudomonas syringae. Induced in roots upon cold and salt stress but then repressed in leaves. Promoted by low energy stress and dark-induced starvation. {ECO:0000269|PubMed:18841482, ECO:0000269|PubMed:20080816, ECO:0000269|PubMed:21278122}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0230348e-78AB023034.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K7J8.
GenBankAF4006188e-78AF400618.1 Arabidopsis thaliana transcription factor-like protein bZIP1 mRNA, complete cds.
GenBankAY0882078e-78AY088207.1 Arabidopsis thaliana clone 43004 mRNA, complete sequence.
GenBankAY1363078e-78AY136307.1 Arabidopsis thaliana putative protein (At5g49450) mRNA, complete cds.
GenBankBT0004008e-78BT000400.1 Arabidopsis thaliana putative protein (At5g49450) mRNA, complete cds.
GenBankCP0026888e-78CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020871920.13e-50basic leucine zipper 1
SwissprotQ9FGX23e-47BZIP1_ARATH; Basic leucine zipper 1
TrEMBLD7MNS46e-49D7MNS4_ARALL; BZIP family transcription factor
STRINGfgenesh2_kg.8__816__AT5G49448.11e-49(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125812231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49450.11e-49basic leucine-zipper 1
Publications ? help Back to Top
  1. Mair A, et al.
    SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants.
    Elife, 2016.
    [PMID:26263501]
  2. Doidy J, et al.
    "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
    BMC Genomics, 2016. 17: p. 92
    [PMID:26843062]
  3. Dash M, et al.
    Poplar PtabZIP1-like enhances lateral root formation and biomass growth under drought stress.
    Plant J., 2017. 89(4): p. 692-705
    [PMID:27813246]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Lee DH,Park SJ,Ahn CS,Pai HS
    MRF Family Genes Are Involved in Translation Control, Especially under Energy-Deficient Conditions, and Their Expression and Functions Are Modulated by the TOR Signaling Pathway.
    Plant Cell, 2017. 29(11): p. 2895-2920
    [PMID:29084871]
  6. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]
  7. Para A,Li Y,Coruzzi GM
    μChIP-Seq for Genome-Wide Mapping of In Vivo TF-DNA Interactions in Arabidopsis Root Protoplasts.
    Methods Mol. Biol., 2018. 1761: p. 249-261
    [PMID:29525963]