PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.31350s0004.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 295aa    MW: 34546.4 Da    PI: 6.4422
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.31350s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-0784125145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           +g W +e+ el  +  k++G++ W+t a  mg  + +k++k+ w+
  Araha.31350s0004.1.p  84 KGMWAKEDIELVMEFQKKHGND-WRTLADAMG--KHRKHVKDAWR 125
                           688*******************.********9..78999999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.1352179IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.9E-650124IPR009057Homeodomain-like
PROSITE profilePS500906.53984126IPR017877Myb-like domain
SuperFamilySSF466891.56E-684145IPR009057Homeodomain-like
PfamPF139218.0E-887145No hitNo description
PROSITE profilePS500906.679129197IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-5132197IPR009057Homeodomain-like
SuperFamilySSF466899.39E-6177251IPR009057Homeodomain-like
PROSITE profilePS500907.549199252IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAEEKKRKKS DTRVDAGEIV EEINAVLEYI DNHALGEEGI KMVMDCKSHP QLKGCWKEIA  60
SALPWRAYNS VYNRAHTIFE AGSKGMWAKE DIELVMEFQK KHGNDWRTLA DAMGKHRKHV  120
KDAWRRGRLT EKKKGHWMRE EYQKLFDLVN KDLRMKAFQE KHSKHGMLKD NIPWMAISDV  180
LGTRDHVTCC SKWYEQLMSP MVAKGMWANV DDYRLLEELL KLDAACIDDV DWDNLLENRD  240
GEACRKRWNQ MIIHIGVPKS KTFAEQVEIL SERYCPDIAE DREDFDNRPY DPED*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
148KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.31350s0004.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0100720.0AB010072.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MEE6.
GenBankAY5196530.0AY519653.1 Arabidopsis thaliana MYB transcription factor (At5g41020) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002868619.10.0RNA polymerase I termination factor
TrEMBLD7MJ000.0D7MJ00_ARALL; Uncharacterized protein
STRINGscaffold_703858.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63272537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.10.0MYB_related family protein