PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araha.31350s0003.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 219aa MW: 24208 Da PI: 8.4642 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107 | 2.9e-33 | 36 | 133 | 3 | 93 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssasec.eaesss 79 +kk+++ ++h kv+gR+RRvRl+ +caar+++L++eLG+++d++t+eWLlqqa+p+i+ +tg+ s + ++ + Araha.31350s0003.1.p 36 KKKQPNRDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQQAEPSIISATGNgiksigttttdS-----VSqSPLTAD 119 79*************************************************************777776542220.....112233333 PP TCP 80 ssasnsssgkaaks 93 ++s++ +g+++++ Araha.31350s0003.1.p 120 LMVSHNVEGASRTQ 133 33333333322222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 24.88 | 41 | 95 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 4.8E-27 | 41 | 142 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
RKQTEVKGFD IVVGDKELKR KKKKKEEEEQ LLDEKKKKQP NRDRHLKVEG RGRRVRLPPL 60 CAARIYQLTK ELGHKSDGET LEWLLQQAEP SIISATGNGI KSIGTTTTDS VSQSPLTADL 120 MVSHNVEGAS RTQMAANETG QTTGGFDLNY GIGFGFNGVS EIGFGNNQTP GLELGLSQDG 180 NVRNLNPQVY QQVGQEQSRV LYHHSHEDQQ QSAEKHGF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 18 | 24 | KRKKKKK |
2 | 18 | 36 | KRKKKKKEEEEQLLDEKKK |
3 | 19 | 25 | RKKKKKE |
4 | 22 | 37 | KKKEEEEQLLDEKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araha.31350s0003.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002870658.2 | 1e-126 | transcription factor TCP6 | ||||
Swissprot | Q9FLM6 | 1e-108 | TCP6_ARATH; Transcription factor TCP6 | ||||
TrEMBL | D7MIZ9 | 1e-124 | D7MIZ9_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.7__3309__AT5G41030.1 | 1e-125 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15743 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41030.1 | 1e-104 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Araha.31350s0003.1.p |
Publications ? help Back to Top | |||
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