PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.30810s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 223aa    MW: 25935.6 Da    PI: 9.5321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.30810s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.57e-13117158351
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                            +GV++ k + +W A I++      +k+++lg+f + eeAa+++++a+ 
  Araha.30810s0001.1.p 117 MRGVYY-K-NMKWQAAIKVK-----KKQIHLGTFASQEEAARLYDRAAF 158
                           79**96.5.7*********4.....6********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.44105171IPR001471AP2/ERF domain
PfamPF008473.0E-7116159IPR001471AP2/ERF domain
SMARTSM003801.7E-7116173IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-10117161IPR016177DNA-binding domain
CDDcd000182.67E-12118169No hitNo description
Gene3DG3DSA:3.30.730.105.8E-9118163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MVSLRRRRLL GLCCGPNGYV TPLPFLTAEE MITGIPNPNA KSAYNIGPAE TFKTAIEEKM  60
AIEERSRITR SKHMHFGSDY SDISPVNSDS ISPKYQPPKR RKQHRRKRVH NQEPCLMRGV  120
YYKNMKWQAA IKVKKKQIHL GTFASQEEAA RLYDRAAFMC GREPNFELSE EDKRELKQQS  180
WEEFLDCTRR TITNKKPKIR IDHEDKEINA SMPHQPEEEE QD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198107KRRKQHRRKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.30810s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216240.0AK221624.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-94-D09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020876944.11e-138ethylene-responsive transcription factor-like protein At4g13040 isoform X2
SwissprotQ56XP91e-131ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040
TrEMBLF4JS761e-128F4JS76_ARATH; Integrase-type DNA-binding superfamily protein
STRINGAT4G13040.31e-129(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61892646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.11e-127ERF family protein