PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.30494s0001.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 344aa    MW: 39013 Da    PI: 6.9822
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.30494s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017175194120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++C+ C k+F+r  n++ H+
  Araha.30494s0001.1.p 175 FSCHLCLKTFNRYNNMQMHM 194
                           89*****************9 PP
2zf-C2H213.10.0003259281123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C  Cgk F  k + ++H +++
  Araha.30494s0001.1.p 259 FACRRCGKAFAVKGDWRTHEKNC 281
                           78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.577175202IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.8E-4175194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280177197IPR007087Zinc finger, C2H2
SuperFamilySSF576673.33E-6245279No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5246279IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767259279IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MSNPACSNLF NNGCDHNNFN NSTSLSYIYN SHGSYYYSNT TNPNYINHTP TTSTSPNSPP  60
LREALPLLSL SPIRHQEQQD QHYFMDTDQI SSSNFLDDPH VTVDLHLGLP NYGVGENIRS  120
YIAPDTTTDD QDHDRGVEVT VESHLHHDDD HGDLHRGHHY WIPTPSQILI GPTQFSCHLC  180
LKTFNRYNNM QMHMWGHGSQ YRKGPESLRG TQPTGMLRLP CFCCAPGCKN NIDHPRAKPL  240
KDFRTLQTHY KRKHGSRPFA CRRCGKAFAV KGDWRTHEKN CGKLWYCSCG SDFKHKRSLK  300
DHVKAFGNGH VPCGIDSFGG DHEDYYEAAS DIEQQDDSNN NEC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00197DAPTransfer from AT1G51220Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.30494s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306545.10.0zinc finger protein WIP5
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLR0IQE20.0R0IQE2_9BRAS; Uncharacterized protein
STRINGCagra.2093s0011.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]