PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.30133s0002.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 359aa    MW: 39035.4 Da    PI: 9.3174
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.30133s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.6e-0996118326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           ++ C+++   G Ck+G++C+F H+
  Araha.30133s0002.1.p  96 RSVCKYWKD-GNCKRGEQCQFLHS 118
                           578******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.17393120IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-694119IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-696118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-796118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-798118IPR000571Zinc finger, CCCH-type
SuperFamilySSF509789.16E-30118356IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.6E-7119161IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.65124163IPR001680WD40 repeat
PROSITE profilePS5008212.547131172IPR001680WD40 repeat
PROSITE profilePS5029411.761131172IPR017986WD40-repeat-containing domain
PfamPF117153.7E-5146179No hitNo description
PROSITE patternPS006780150164IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-6150164IPR020472G-protein beta WD-40 repeat
Gene3DG3DSA:2.140.10.105.5E-6162226IPR027295Quinoprotein alcohol dehydrogenase-like domain
SMARTSM00320250203240IPR001680WD40 repeat
PROSITE profilePS502949.968210296IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.8E-18227358IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.0011249287IPR001680WD40 repeat
PfamPF004002.2E-5252287IPR001680WD40 repeat
PROSITE profilePS5008210.074271296IPR001680WD40 repeat
PROSITE patternPS006780274288IPR019775WD40 repeat, conserved site
PRINTSPR003201.3E-6274288IPR020472G-protein beta WD-40 repeat
SMARTSM003203.4314351IPR001680WD40 repeat
PRINTSPR003201.3E-6338352IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDYKSPRKYS HGRNFGVARQ QDFAADIVTR RPYLPYDNGM KKGPNKLSRN LVWTSKEYQS  60
PEGNKPRKNA ANGLTNPQVL GTGSNQPRKN VAYGPRSVCK YWKDGNCKRG EQCQFLHSWS  120
CFSGLVMVAG LEGHKKELKG IGLPQGSDKL FSVSSDGALR IWDCNSGQCV HSINLQAEAG  180
SLISEGPWVF LGLPNAVKAF NVQTGKDLHL EGVVGQVHAM TVANGMLFAG TSCGSILVWK  240
ATDSDESDPF KYLTALEGHH SGEVTCFVVG GQLLYSGSVD RTIKVWDLNT LQYAKPIIFC  300
SYQNGTVGIF DLPSFQERGK MFSTHTIGTL TIGPQGLLFS GDKSGNLRVW SLAAGTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-1113135511245Tako8
6g6n_A4e-1113135511245Tako8
6g6n_B4e-1113135511245Tako8
6g6n_C4e-1113135511245Tako8
6g6o_A4e-1113135511285Ika8
6g6o_B4e-1113135511285Ika8
6g6o_C4e-1113135511285Ika8
6g6p_A4e-1113135511285Ika8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.30133s0002.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937710.0AB493771.1 Arabidopsis thaliana At5g40880 mRNA for hypothetical protein, partial cds, clone: RAAt5g40880.
GenBankAJ2520650.0AJ252065.1 Arabidopsis thaliana partial mRNA for zfwd3 protein (zfwd3 gene).
GenBankBT0304000.0BT030400.1 Arabidopsis thaliana At5g40880 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020872138.10.0zinc finger CCCH domain-containing protein 59 isoform X1
RefseqXP_020872139.10.0zinc finger CCCH domain-containing protein 59 isoform X2
SwissprotQ9FKR90.0C3H59_ARATH; Zinc finger CCCH domain-containing protein 59
TrEMBLD7MJ150.0D7MJ15_ARALL; WD-40 repeat family protein
STRINGfgenesh2_kg.7__3321__AT5G40880.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40481848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G40880.10.0C3H family protein