PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.2977s0002.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

MYB_related

Protein Properties

Length: 288aa MW: 31386 Da PI: 6.6857

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.2977s0002.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.5	1.3e-12	103	147	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+++++ + ++ G+g+Wk I+r + k Rt+ q+ s+ qky Araha.2977s0002.1.p 103 PWTENEHKRFLIGLQKVGKGDWKGISRNFVKSRTPTQVASHAQKY 147 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.05	96	152	IPR017930	Myb domain
SuperFamily	SSF46689	1.12E-16	98	152	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-17	99	150	IPR006447	Myb domain, plants
SMART	SM00717	1.0E-5	100	150	IPR001005	SANT/Myb domain
CDD	cd00167	1.90E-6	103	148	No hit	No description
Pfam	PF00249	4.3E-9	103	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-9	103	147	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MAAVSSSSET GDCGATGKRD EIMLFGVRVV VDPMRKCVSL NNLSDYEKSS PEDEIPKIIA 60 AGAGDGEDKN EADAKVIFAD GYASANDAVQ ISSSSGGRKR GIPWTENEHK RFLIGLQKVG 120 KGDWKGISRN FVKSRTPTQV ASHAQKYFLR RTNLNRRRRR SSLFDITTET VTEMPMEQDP 180 TQENSPLPET NTSSGHQVMQ VFPDVAVPTK TENAPQTFHI NDPYLVPVTF QAKPAFNLNT 240 DAAPLSLNLS LASSFNLNEQ PNSRHSAFAM MPSFSDGDSN SSIIRVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00149	DAP	Transfer from AT1G19000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.2977s0002.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK316815	0.0	AK316815.1 Arabidopsis thaliana AT1G19000 mRNA, complete cds, clone: RAFL08-11-F04.
GenBank	AY045881	0.0	AY045881.1 Arabidopsis thaliana putative Myb-related transcription activator protein (At1g19000) mRNA, complete cds.
GenBank	AY079415	0.0	AY079415.1 Arabidopsis thaliana putative Myb-related transcription activator protein (At1g19000) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_173334.1	0.0	Homeodomain-like superfamily protein
Refseq	NP_849689.1	0.0	Homeodomain-like superfamily protein
Swissprot	Q2V9B0	5e-57	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	A0A178W7J9	0.0	A0A178W7J9_ARATH; Uncharacterized protein
TrEMBL	Q9LMC7	0.0	Q9LMC7_ARATH; AT1G19000 protein
STRING	AT1G19000.2	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2461	26	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-170	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Araha.2977s0002.1.p

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]